Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZNF876P-202ENST00000398732 1485 ntBASIC3.7□□□□□ -1.82
SOX3P41225 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.7□□□□□ -1.82
SOX3P41225 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SOX3P41225 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SOX3P41225 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
SOX3P41225 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SOX3P41225 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.69□□□□□ -1.82
SOX3P41225 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
SOX3P41225 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 RNU1-64P-201ENST00000365443 163 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 AL133264.1-201ENST00000407157 562 ntBASIC3.69□□□□□ -1.82
SOX3P41225 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC008280.1-201ENST00000418851 412 ntBASIC3.69□□□□□ -1.82
SOX3P41225 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 GTF2IP23-201ENST00000423746 351 ntBASIC3.69□□□□□ -1.82
SOX3P41225 RPL30P3-201ENST00000424262 333 ntBASIC3.69□□□□□ -1.82
SOX3P41225 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.69□□□□□ -1.82
SOX3P41225 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.69□□□□□ -1.82
SOX3P41225 RPS29P7-201ENST00000439662 171 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.69□□□□□ -1.82
SOX3P41225 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.69□□□□□ -1.82
SOX3P41225 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 RFC5P1-201ENST00000454419 874 ntBASIC3.69□□□□□ -1.82
SOX3P41225 RPL5P24-201ENST00000463742 885 ntBASIC3.69□□□□□ -1.82
SOX3P41225 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.69□□□□□ -1.82
SOX3P41225 AC108734.3-201ENST00000481241 1165 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC146944.2-203ENST00000502493 354 ntBASIC3.69□□□□□ -1.82
SOX3P41225 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 BOLA3P3-201ENST00000505182 232 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC139495.1-202ENST00000513164 354 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.69□□□□□ -1.82
SOX3P41225 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.69□□□□□ -1.82
SOX3P41225 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.69□□□□□ -1.82
SOX3P41225 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.69□□□□□ -1.82
SOX3P41225 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 AC084757.1-201ENST00000559987 490 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.69□□□□□ -1.82
SOX3P41225 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.69□□□□□ -1.82
SOX3P41225 AC141257.3-201ENST00000572906 215 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC022069.1-201ENST00000582910 658 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 AL592436.1-201ENST00000605135 558 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AL109618.2-201ENST00000605527 211 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.69□□□□□ -1.82
SOX3P41225 AL354760.1-201ENST00000608357 643 ntBASIC3.69□□□□□ -1.82
SOX3P41225 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX3P41225 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
SOX3P41225 AC107075.1-201ENST00000613695 314 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AL512506.2-201ENST00000624472 458 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AC107081.3-201ENST00000612715 2034 ntBASIC3.69□□□□□ -1.82
SOX3P41225 AL356489.2-201ENST00000566968 3528 ntBASIC3.69□□□□□ -1.82
SOX3P41225 NCAPGP1-201ENST00000505112 1814 ntBASIC3.69□□□□□ -1.82
SOX3P41225 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.69□□□□□ -1.82
SOX3P41225 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
SOX3P41225 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
SOX3P41225 SAGE2P-201ENST00000420011 2126 ntBASIC3.68□□□□□ -1.82
SOX3P41225 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
SOX3P41225 Z99496.1-201ENST00000469424 1477 ntBASIC3.68□□□□□ -1.82
SOX3P41225 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.68□□□□□ -1.82
SOX3P41225 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 RNU6-115P-201ENST00000364310 107 ntBASIC3.68□□□□□ -1.82
SOX3P41225 RNU6-1293P-201ENST00000384077 107 ntBASIC3.68□□□□□ -1.82
SOX3P41225 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 MTCO3P31-201ENST00000405526 789 ntBASIC3.68□□□□□ -1.82
SOX3P41225 MRPS36P1-201ENST00000421291 307 ntBASIC3.68□□□□□ -1.82
SOX3P41225 RPP40P1-201ENST00000426762 456 ntBASIC3.68□□□□□ -1.82
SOX3P41225 IFNNP1-201ENST00000429219 553 ntBASIC3.68□□□□□ -1.82
SOX3P41225 MTATP6P17-201ENST00000431030 672 ntBASIC3.68□□□□□ -1.82
SOX3P41225 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.68□□□□□ -1.82
SOX3P41225 B3GNT2P1-201ENST00000434960 952 ntBASIC3.68□□□□□ -1.82
SOX3P41225 AC096638.2-201ENST00000434965 711 ntBASIC3.68□□□□□ -1.82
SOX3P41225 YWHAZP8-201ENST00000436935 731 ntBASIC3.68□□□□□ -1.82
SOX3P41225 COX7BP2-201ENST00000437976 242 ntBASIC3.68□□□□□ -1.82
SOX3P41225 HMGB3P21-201ENST00000452483 547 ntBASIC3.68□□□□□ -1.82
SOX3P41225 HMGN3P1-201ENST00000453847 193 ntBASIC3.68□□□□□ -1.82
SOX3P41225 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
SOX3P41225 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.68□□□□□ -1.82
SOX3P41225 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.68□□□□□ -1.82
SOX3P41225 MTCYBP35-201ENST00000503630 1137 ntBASIC3.68□□□□□ -1.82
SOX3P41225 BTF3L4P4-201ENST00000506381 449 ntBASIC3.68□□□□□ -1.82
SOX3P41225 AC008837.2-201ENST00000513076 418 ntBASIC3.68□□□□□ -1.82
SOX3P41225 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms