Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPL32P35-201ENST00000415214 394 ntBASIC4.65□□□□□ -1.67
CUX1P39880 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.65□□□□□ -1.67
CUX1P39880 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.65□□□□□ -1.67
CUX1P39880 FGF7P3-201ENST00000454645 303 ntBASIC4.65□□□□□ -1.67
CUX1P39880 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.65□□□□□ -1.67
CUX1P39880 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.65□□□□□ -1.67
CUX1P39880 AC078817.1-201ENST00000492623 435 ntBASIC4.65□□□□□ -1.67
CUX1P39880 Y_RNA.676-201ENST00000516393 96 ntBASIC4.65□□□□□ -1.67
CUX1P39880 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.65□□□□□ -1.67
CUX1P39880 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.65□□□□□ -1.67
CUX1P39880 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.65□□□□□ -1.67
CUX1P39880 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.65□□□□□ -1.67
CUX1P39880 AC009313.2-201ENST00000417893 1941 ntBASIC4.65□□□□□ -1.67
CUX1P39880 TAB3P1-202ENST00000452645 1634 ntBASIC4.64□□□□□ -1.67
CUX1P39880 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.64□□□□□ -1.67
CUX1P39880 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CUX1P39880 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CUX1P39880 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CUX1P39880 RNU6-304P-201ENST00000364855 107 ntBASIC4.64□□□□□ -1.67
CUX1P39880 SNORA3.2-201ENST00000408221 125 ntBASIC4.64□□□□□ -1.67
CUX1P39880 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.64□□□□□ -1.67
CUX1P39880 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
CUX1P39880 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CUX1P39880 AC012020.1-201ENST00000624541 1728 ntBASIC4.63□□□□□ -1.67
CUX1P39880 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CUX1P39880 ZNF658B-202ENST00000615961 3375 ntBASIC4.63□□□□□ -1.67
CUX1P39880 MIR423-201ENST00000362201 94 ntBASIC4.63□□□□□ -1.67
CUX1P39880 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CUX1P39880 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CUX1P39880 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CUX1P39880 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.63□□□□□ -1.67
CUX1P39880 RPS12P23-201ENST00000419579 400 ntBASIC4.63□□□□□ -1.67
CUX1P39880 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.63□□□□□ -1.67
CUX1P39880 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.63□□□□□ -1.67
CUX1P39880 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.63□□□□□ -1.67
CUX1P39880 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CUX1P39880 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CUX1P39880 MTCO1P22-201ENST00000604619 1360 ntBASIC4.63□□□□□ -1.67
CUX1P39880 AP006437.1-201ENST00000641440 3685 ntBASIC4.62□□□□□ -1.67
CUX1P39880 SPATA2P1-201ENST00000431223 2055 ntBASIC4.62□□□□□ -1.67
CUX1P39880 PWAR6-201ENST00000552334 4618 ntBASIC4.62□□□□□ -1.67
CUX1P39880 U3.6-201ENST00000363622 211 ntBASIC4.62□□□□□ -1.67
CUX1P39880 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.62□□□□□ -1.67
CUX1P39880 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.62□□□□□ -1.67
CUX1P39880 AC004801.2-202ENST00000463559 283 ntBASIC4.62□□□□□ -1.67
CUX1P39880 RN7SL330P-201ENST00000469709 307 ntBASIC4.62□□□□□ -1.67
CUX1P39880 RPS20P22-201ENST00000473700 357 ntBASIC4.62□□□□□ -1.67
CUX1P39880 SRIP1-201ENST00000489235 288 ntBASIC4.62□□□□□ -1.67
CUX1P39880 AC008413.1-201ENST00000511864 177 ntBASIC4.62□□□□□ -1.67
CUX1P39880 AP003122.3-201ENST00000526316 255 ntBASIC4.62□□□□□ -1.67
CUX1P39880 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.62□□□□□ -1.67
CUX1P39880 AL355493.4-201ENST00000618530 292 ntBASIC4.62□□□□□ -1.67
CUX1P39880 AC006111.3-201ENST00000622137 383 ntBASIC4.62□□□□□ -1.67
CUX1P39880 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CUX1P39880 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC4.62□□□□□ -1.67
CUX1P39880 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CUX1P39880 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.62□□□□□ -1.67
CUX1P39880 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CUX1P39880 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CUX1P39880 RNA5SP274-201ENST00000410484 108 ntBASIC4.62□□□□□ -1.67
CUX1P39880 AC112220.1-201ENST00000434628 355 ntBASIC4.62□□□□□ -1.67
CUX1P39880 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.62□□□□□ -1.67
CUX1P39880 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC4.62□□□□□ -1.67
CUX1P39880 AC007424.1-203ENST00000554613 687 ntBASIC4.62□□□□□ -1.67
CUX1P39880 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CUX1P39880 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CUX1P39880 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
CUX1P39880 RNU4-44P-201ENST00000363050 141 ntBASIC4.61□□□□□ -1.67
CUX1P39880 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CUX1P39880 RNA5SP508-201ENST00000411327 119 ntBASIC4.61□□□□□ -1.67
CUX1P39880 RPL7P10-201ENST00000417407 739 ntBASIC4.61□□□□□ -1.67
CUX1P39880 ANXA2P1-201ENST00000505539 926 ntBASIC4.61□□□□□ -1.67
CUX1P39880 RNA5SP320-201ENST00000516263 124 ntBASIC4.61□□□□□ -1.67
CUX1P39880 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CUX1P39880 AL451049.1-201ENST00000608672 497 ntBASIC4.61□□□□□ -1.67
CUX1P39880 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.61□□□□□ -1.67
CUX1P39880 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.61□□□□□ -1.67
CUX1P39880 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
CUX1P39880 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CUX1P39880 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CUX1P39880 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
CUX1P39880 MIR518C-201ENST00000384822 101 ntBASIC4.6□□□□□ -1.67
CUX1P39880 AC233981.1-201ENST00000423224 461 ntBASIC4.6□□□□□ -1.67
CUX1P39880 RPS20P32-201ENST00000456044 356 ntBASIC4.6□□□□□ -1.67
CUX1P39880 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.6□□□□□ -1.67
CUX1P39880 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.6□□□□□ -1.67
CUX1P39880 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC4.6□□□□□ -1.67
CUX1P39880 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.6□□□□□ -1.67
CUX1P39880 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.6□□□□□ -1.67
CUX1P39880 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
CUX1P39880 AC107081.3-201ENST00000612715 2034 ntBASIC4.6□□□□□ -1.67
CUX1P39880 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.59□□□□□ -1.67
CUX1P39880 U3.11-201ENST00000364476 212 ntBASIC4.59□□□□□ -1.67
CUX1P39880 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC4.59□□□□□ -1.67
CUX1P39880 AL513043.1-201ENST00000439124 535 ntBASIC4.59□□□□□ -1.67
CUX1P39880 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.59□□□□□ -1.67
CUX1P39880 AC090281.1-201ENST00000523019 276 ntBASIC4.59□□□□□ -1.67
CUX1P39880 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.59□□□□□ -1.67
CUX1P39880 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.59□□□□□ -1.67
CUX1P39880 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms