Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL023807.1-201ENST00000407932 359 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXD3P31249 TPMTP2-201ENST00000414372 726 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AF186996.5-201ENST00000418098 904 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AL513174.1-201ENST00000423182 629 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC234779.1-201ENST00000425910 285 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC091390.1-201ENST00000433904 331 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 ZDHHC20P1-204ENST00000435787 423 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC073264.2-201ENST00000448886 166 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC027673.1-201ENST00000456245 405 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD3P31249 snoU13.7-201ENST00000459220 104 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD3P31249 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD3P31249 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 RPL9P6-201ENST00000492764 598 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 NIFKP7-201ENST00000503365 834 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 RNU6-718P-201ENST00000516166 105 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC100784.1-201ENST00000522790 310 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 ZNF705CP-201ENST00000530515 889 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 AP006289.1-201ENST00000538089 277 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC006349.1-201ENST00000555526 235 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 HMGB3P26-201ENST00000560051 582 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC209154.1-201ENST00000582156 337 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 MIR4512-201ENST00000583257 77 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 MIR4737-201ENST00000583979 81 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC009977.1-201ENST00000586015 570 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 NF1P5-201ENST00000588287 448 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD3P31249 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC068790.4-201ENST00000602474 263 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC112187.2-201ENST00000604345 283 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC024941.1-201ENST00000612250 334 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 AC019206.1-201ENST00000621938 425 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.84□□□□□ -1.79
HOXD3P31249 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HOXD3P31249 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.8
HOXD3P31249 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HOXD3P31249 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.84□□□□□ -1.8
HOXD3P31249 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.8
HOXD3P31249 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC3.84□□□□□ -1.8
HOXD3P31249 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 AL592437.2-201ENST00000421655 2434 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD3P31249 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXD3P31249 RNU1-32P-201ENST00000363937 159 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 Y_RNA.248-201ENST00000364501 109 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 RNU6-769P-201ENST00000384407 104 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 RPL31P52-201ENST00000407532 367 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 U3.32-201ENST00000408116 212 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD3P31249 AL133384.1-201ENST00000412744 351 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 COX5BP7-201ENST00000414780 274 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC119751.6-201ENST00000416712 186 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC069213.2-201ENST00000420238 366 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 RAD23BP1-201ENST00000421404 1227 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD3P31249 IGKV1OR9-1-201ENST00000424370 284 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC016712.1-201ENST00000431088 378 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC109583.1-201ENST00000432156 268 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 RPL7P11-201ENST00000437586 658 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 SNRPEP7-201ENST00000438350 220 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 MTATP6P23-201ENST00000440153 476 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 AL353572.1-201ENST00000442490 417 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 RPL36AP15-201ENST00000444514 266 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 EEF1A1P1-201ENST00000447052 739 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 PAXBP1P1-201ENST00000449315 447 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXD3P31249 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC126182.1-201ENST00000478134 357 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 FAM172BP-201ENST00000487497 1089 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC005726.1-201ENST00000494679 427 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms