Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 BNIP3P5-201ENST00000562290 498 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC009101.1-201ENST00000568135 242 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AL591034.3-201ENST00000605511 685 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AP001486.2-201ENST00000561652 5113 ntBASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CHMP4AQ9BY43 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC116667.1-201ENST00000604855 2072 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 MIR591-201ENST00000385290 95 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 RNA5SP317-201ENST00000410176 116 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 RN7SKP263-201ENST00000411194 309 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 RNA5SP311-201ENST00000411290 116 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 HMGB3P23-201ENST00000414981 585 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AL356095.1-201ENST00000417217 199 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 BOLA3P4-201ENST00000418151 400 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 TRAPPC2P4-201ENST00000421750 331 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AL391219.1-201ENST00000422570 483 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 DUTP6-201ENST00000425573 462 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 MTCO1P3-201ENST00000429327 192 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 RPL31P54-201ENST00000429803 370 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AL049830.2-201ENST00000480072 201 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 STMN1P2-201ENST00000508435 439 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC108064.1-201ENST00000513791 460 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 RNA5SP315-201ENST00000516340 116 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 RNA5SP312-201ENST00000517068 116 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC022655.2-201ENST00000577280 318 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 MIR3160-1-201ENST00000577972 85 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AL138955.1-201ENST00000622881 1040 ntBASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CHMP4AQ9BY43 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 OR11H4-201ENST00000315409 1082 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 RPL7P26-201ENST00000333817 754 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 RNU6-878P-201ENST00000384578 110 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 STAT4-203ENST00000409995 709 ntTSL 5 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 RNU2-28P-201ENST00000410457 189 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 RNU6-712P-201ENST00000410558 100 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 AC092017.2-201ENST00000427600 362 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 NUTF2P7-201ENST00000453086 375 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 AC013828.1-201ENST00000481845 158 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 AL132838.2-201ENST00000492041 314 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 RPL29P14-201ENST00000495837 428 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 SNORA48.10-201ENST00000516965 160 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 MTCO3P15-201ENST00000526563 574 ntBASIC5.31□□□□□ -1.56
CHMP4AQ9BY43 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 139 ms