Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AC017037.2-201ENST00000513850 890 ntBASIC3.54□□□□□ -1.84
SHHQ15465 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.54□□□□□ -1.84
SHHQ15465 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.54□□□□□ -1.84
SHHQ15465 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHHQ15465 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.54□□□□□ -1.84
SHHQ15465 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.54□□□□□ -1.84
SHHQ15465 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.54□□□□□ -1.84
SHHQ15465 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.54□□□□□ -1.84
SHHQ15465 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.54□□□□□ -1.84
SHHQ15465 AC105227.2-201ENST00000615075 605 ntBASIC3.54□□□□□ -1.84
SHHQ15465 AC107905.1-201ENST00000616204 426 ntBASIC3.54□□□□□ -1.84
SHHQ15465 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.54□□□□□ -1.84
SHHQ15465 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC3.54□□□□□ -1.84
SHHQ15465 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHHQ15465 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHHQ15465 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.54□□□□□ -1.84
SHHQ15465 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHHQ15465 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHHQ15465 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.54□□□□□ -1.84
SHHQ15465 AC017002.4-201ENST00000604721 1525 ntBASIC3.54□□□□□ -1.84
SHHQ15465 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
SHHQ15465 HSPA8P1-201ENST00000425843 1833 ntBASIC3.54□□□□□ -1.84
SHHQ15465 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
SHHQ15465 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.53□□□□□ -1.84
SHHQ15465 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SHHQ15465 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SHHQ15465 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.53□□□□□ -1.84
SHHQ15465 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.53□□□□□ -1.84
SHHQ15465 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SHHQ15465 RNU6-386P-201ENST00000362650 107 ntBASIC3.53□□□□□ -1.84
SHHQ15465 ZNF736P10Y-201ENST00000403990 1110 ntBASIC3.53□□□□□ -1.84
SHHQ15465 RPL31P52-201ENST00000407532 367 ntBASIC3.53□□□□□ -1.84
SHHQ15465 Z98941.1-201ENST00000407764 100 ntBASIC3.53□□□□□ -1.84
SHHQ15465 Z99755.1-201ENST00000414048 380 ntBASIC3.53□□□□□ -1.84
SHHQ15465 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.53□□□□□ -1.84
SHHQ15465 AL139281.1-201ENST00000422120 335 ntBASIC3.53□□□□□ -1.84
SHHQ15465 AC073464.3-201ENST00000422564 712 ntBASIC3.53□□□□□ -1.84
SHHQ15465 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.53□□□□□ -1.84
SHHQ15465 ZYG11AP1-201ENST00000430329 837 ntBASIC3.53□□□□□ -1.84
SHHQ15465 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.53□□□□□ -1.84
SHHQ15465 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.53□□□□□ -1.84
SHHQ15465 BTBD7P2-201ENST00000441962 620 ntBASIC3.53□□□□□ -1.84
SHHQ15465 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.53□□□□□ -1.84
SHHQ15465 AL157827.1-201ENST00000447622 132 ntBASIC3.53□□□□□ -1.84
SHHQ15465 RPL7P31-201ENST00000450192 724 ntBASIC3.53□□□□□ -1.84
SHHQ15465 AC010683.1-201ENST00000473673 378 ntBASIC3.53□□□□□ -1.84
SHHQ15465 SNORA70.14-201ENST00000516205 110 ntBASIC3.53□□□□□ -1.84
SHHQ15465 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.53□□□□□ -1.84
SHHQ15465 RN7SKP116-201ENST00000516902 319 ntBASIC3.53□□□□□ -1.84
SHHQ15465 AP000926.4-201ENST00000527351 454 ntBASIC3.53□□□□□ -1.84
SHHQ15465 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.53□□□□□ -1.84
SHHQ15465 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.53□□□□□ -1.84
SHHQ15465 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.53□□□□□ -1.84
SHHQ15465 AL109741.3-201ENST00000561748 592 ntBASIC3.53□□□□□ -1.84
SHHQ15465 MIR4435-1-201ENST00000582552 80 ntBASIC3.53□□□□□ -1.84
SHHQ15465 HMGB1P51-201ENST00000605166 638 ntBASIC3.53□□□□□ -1.84
SHHQ15465 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.53□□□□□ -1.84
SHHQ15465 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.53□□□□□ -1.84
SHHQ15465 AL356321.1-201ENST00000621360 228 ntBASIC3.53□□□□□ -1.84
SHHQ15465 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.53□□□□□ -1.84
SHHQ15465 AC010149.2-201ENST00000637608 315 ntBASIC3.53□□□□□ -1.84
SHHQ15465 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.53□□□□□ -1.84
SHHQ15465 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SHHQ15465 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SHHQ15465 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SHHQ15465 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
SHHQ15465 EXOC5P1-201ENST00000510543 1969 ntBASIC3.52□□□□□ -1.85
SHHQ15465 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 XIAPP3-201ENST00000312918 795 ntBASIC3.52□□□□□ -1.85
SHHQ15465 RNA5SP322-201ENST00000363617 119 ntBASIC3.52□□□□□ -1.85
SHHQ15465 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
SHHQ15465 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC3.52□□□□□ -1.85
SHHQ15465 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SHHQ15465 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SHHQ15465 EEF1A1P41-201ENST00000414667 207 ntBASIC3.52□□□□□ -1.85
SHHQ15465 RPL7P53-201ENST00000421245 739 ntBASIC3.52□□□□□ -1.85
SHHQ15465 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 NPM1P24-201ENST00000428039 894 ntBASIC3.52□□□□□ -1.85
SHHQ15465 ATP5C1P1-201ENST00000441945 895 ntBASIC3.52□□□□□ -1.85
SHHQ15465 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC3.52□□□□□ -1.85
SHHQ15465 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.52□□□□□ -1.85
SHHQ15465 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.52□□□□□ -1.85
SHHQ15465 SNRPGP5-201ENST00000456003 220 ntBASIC3.52□□□□□ -1.85
SHHQ15465 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 HESX1-202ENST00000473921 757 ntTSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.52□□□□□ -1.85
SHHQ15465 AC147055.1-201ENST00000509261 750 ntBASIC3.52□□□□□ -1.85
SHHQ15465 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.52□□□□□ -1.85
SHHQ15465 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.52□□□□□ -1.85
SHHQ15465 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.52□□□□□ -1.85
SHHQ15465 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.52□□□□□ -1.85
SHHQ15465 DUXAP6-201ENST00000553858 601 ntBASIC3.52□□□□□ -1.85
SHHQ15465 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.52□□□□□ -1.85
SHHQ15465 MIR4512-201ENST00000583257 77 ntBASIC3.52□□□□□ -1.85
SHHQ15465 ELOCP29-201ENST00000588193 334 ntBASIC3.52□□□□□ -1.85
SHHQ15465 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.52□□□□□ -1.85
SHHQ15465 VN1R84P-201ENST00000593697 235 ntBASIC3.52□□□□□ -1.85
SHHQ15465 KLKP1-201ENST00000595979 403 ntBASIC3.52□□□□□ -1.85
SHHQ15465 AC245100.7-201ENST00000609678 442 ntBASIC3.52□□□□□ -1.85
SHHQ15465 TUG1_1.1-201ENST00000610654 145 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms