Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC137499.1-201ENST00000427602 88 ntBASIC5.28□□□□□ -1.56
RNF4P78317 SRIP2-201ENST00000428470 166 ntBASIC5.28□□□□□ -1.56
RNF4P78317 SAR1AP4-201ENST00000429225 591 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 RPL12P16-201ENST00000431098 498 ntBASIC5.28□□□□□ -1.56
RNF4P78317 TIMM9P1-201ENST00000436122 256 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.28□□□□□ -1.56
RNF4P78317 AC108734.1-201ENST00000439549 399 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AC073415.1-201ENST00000449240 153 ntBASIC5.28□□□□□ -1.56
RNF4P78317 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 NANOGP10-201ENST00000453325 895 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.28□□□□□ -1.56
RNF4P78317 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.28□□□□□ -1.56
RNF4P78317 Y_RNA.632-201ENST00000459189 102 ntBASIC5.28□□□□□ -1.56
RNF4P78317 HMGN2P26-201ENST00000463169 339 ntBASIC5.28□□□□□ -1.56
RNF4P78317 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
RNF4P78317 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 AL671862.1-201ENST00000515851 349 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.28□□□□□ -1.56
RNF4P78317 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 AC018552.3-201ENST00000567416 561 ntBASIC5.28□□□□□ -1.56
RNF4P78317 MIR4505-201ENST00000582238 73 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.28□□□□□ -1.56
RNF4P78317 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 LLPHP1-201ENST00000603571 367 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 AC093388.1-201ENST00000609166 430 ntBASIC5.28□□□□□ -1.56
RNF4P78317 OR6R2P-201ENST00000609216 300 ntBASIC5.28□□□□□ -1.56
RNF4P78317 RNA5SP440-201ENST00000612665 119 ntBASIC5.28□□□□□ -1.56
RNF4P78317 AL596245.1-201ENST00000618994 362 ntBASIC5.28□□□□□ -1.56
RNF4P78317 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.28□□□□□ -1.56
RNF4P78317 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.28□□□□□ -1.56
RNF4P78317 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
RNF4P78317 DHX40P1-201ENST00000588725 1412 ntBASIC5.28□□□□□ -1.56
RNF4P78317 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
RNF4P78317 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
RNF4P78317 MTND5P28-201ENST00000438005 1594 ntBASIC5.28□□□□□ -1.56
RNF4P78317 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
RNF4P78317 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF4P78317 LARP1BP1-201ENST00000506036 1359 ntBASIC5.28□□□□□ -1.56
RNF4P78317 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.27□□□□□ -1.57
RNF4P78317 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.27□□□□□ -1.57
RNF4P78317 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
RNF4P78317 RNA5SP131-201ENST00000365452 119 ntBASIC5.27□□□□□ -1.57
RNF4P78317 RNA5SP30-201ENST00000365552 115 ntBASIC5.27□□□□□ -1.57
RNF4P78317 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 Y_RNA.615-201ENST00000410769 117 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AC004987.3-201ENST00000413879 771 ntBASIC5.27□□□□□ -1.57
RNF4P78317 RPL6P29-201ENST00000414863 865 ntBASIC5.27□□□□□ -1.57
RNF4P78317 BMS1P17-202ENST00000416720 316 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.27□□□□□ -1.57
RNF4P78317 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 AL356276.2-201ENST00000435919 558 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC5.27□□□□□ -1.57
RNF4P78317 AC092013.1-201ENST00000438795 332 ntBASIC5.27□□□□□ -1.57
RNF4P78317 MTND6P18-201ENST00000439477 513 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AP000281.1-201ENST00000444036 316 ntBASIC5.27□□□□□ -1.57
RNF4P78317 EEF1B2P6-201ENST00000445713 673 ntBASIC5.27□□□□□ -1.57
RNF4P78317 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 AC104308.1-201ENST00000454621 333 ntBASIC5.27□□□□□ -1.57
RNF4P78317 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
RNF4P78317 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.27□□□□□ -1.57
RNF4P78317 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC5.27□□□□□ -1.57
RNF4P78317 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.27□□□□□ -1.57
RNF4P78317 RN7SKP116-201ENST00000516902 319 ntBASIC5.27□□□□□ -1.57
RNF4P78317 NARSP2-201ENST00000518524 679 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 SUMO2P20-201ENST00000520803 283 ntBASIC5.27□□□□□ -1.57
RNF4P78317 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.27□□□□□ -1.57
RNF4P78317 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.27□□□□□ -1.57
RNF4P78317 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.27□□□□□ -1.57
RNF4P78317 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
RNF4P78317 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 AC012182.1-201ENST00000570133 895 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF4P78317 AC021646.1-201ENST00000605469 484 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AL121992.2-201ENST00000606262 256 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AC090948.1-201ENST00000607464 549 ntBASIC5.27□□□□□ -1.57
RNF4P78317 uc_338.12-201ENST00000616344 181 ntBASIC5.27□□□□□ -1.57
RNF4P78317 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.27□□□□□ -1.57
RNF4P78317 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
RNF4P78317 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
RNF4P78317 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 MTND5P3-201ENST00000438536 1800 ntBASIC5.27□□□□□ -1.57
RNF4P78317 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
RNF4P78317 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF4P78317 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms