Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-491P-201ENST00000516099 110 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 RN7SKP43-201ENST00000516173 320 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 RN7SKP157-201ENST00000516174 282 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 RNA5SP380-201ENST00000517190 98 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA1P55317 CCNG2P1-201ENST00000549521 1000 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA1P55317 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC2.97□□□□□ -1.93
FOXA1P55317 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA1P55317 MIR4716-201ENST00000579628 84 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA1P55317 VN1R84P-201ENST00000593697 235 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA1P55317 AC090953.1-201ENST00000604305 1092 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AC010200.2-201ENST00000605098 235 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA1P55317 AC107294.3-201ENST00000609211 526 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA1P55317 U6.105-201ENST00000637379 88 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 MTCO1P8-201ENST00000416914 1523 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AL021368.2-201ENST00000606125 5352 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AL355596.1-201ENST00000565399 3996 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AL133383.2-201ENST00000622958 2336 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 MTND5P19-201ENST00000424872 1794 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA1P55317 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
FOXA1P55317 GTF2H2B-203ENST00000508065 1432 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA1P55317 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA1P55317 OFD1P5Y-201ENST00000447585 2590 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA1P55317 SNORA63.1-201ENST00000362493 131 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 SNORD46.1-201ENST00000364139 104 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 SNORA7.4-201ENST00000384249 137 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 MIR183-201ENST00000384958 110 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 EI24P2-201ENST00000397776 1076 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 HMGB1P13-201ENST00000406019 642 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 SNORA11.1-201ENST00000408133 129 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 RPL26P37-201ENST00000411983 438 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC2.96□□□□□ -1.94
FOXA1P55317 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.96□□□□□ -1.94
FOXA1P55317 MTCO3P21-201ENST00000430791 643 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 NDUFA5P10-201ENST00000432147 357 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC016696.1-201ENST00000446949 318 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.96□□□□□ -1.94
FOXA1P55317 RN7SL863P-201ENST00000462370 296 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 RN7SL283P-201ENST00000489055 303 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA1P55317 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC021087.2-201ENST00000504656 1203 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC110794.1-201ENST00000505816 425 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.96□□□□□ -1.94
FOXA1P55317 ACTR6P1-201ENST00000514311 1104 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 MTND5P21-201ENST00000531961 522 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC074029.2-201ENST00000551045 634 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC007423.1-201ENST00000605009 627 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC073111.2-201ENST00000605657 1075 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC243654.2-201ENST00000612843 443 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC138932.5-201ENST00000617759 563 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC007318.2-201ENST00000620999 243 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA1P55317 AC119674.1-220ENST00000641502 1048 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 MTCO1P12-201ENST00000414273 1543 ntBASIC2.96□□□□□ -1.94
FOXA1P55317 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA1P55317 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA1P55317 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA1P55317 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA1P55317 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA1P55317 AC091152.2-201ENST00000591628 2569 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA1P55317 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA1P55317 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
FOXA1P55317 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA1P55317 Y_RNA.333-201ENST00000365274 102 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
FOXA1P55317 RNU6-761P-201ENST00000384148 107 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 MIR7-3-201ENST00000384898 110 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 MIR320B1-201ENST00000390209 79 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA1P55317 LSM5-206ENST00000409987 504 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA1P55317 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA1P55317 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA1P55317 AC009969.1-201ENST00000438726 172 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 MTCYBP31-201ENST00000438855 1122 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 AL157827.1-201ENST00000447622 132 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 AL627224.1-201ENST00000448334 444 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA1P55317 FABP5P6-201ENST00000510588 409 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 RNU6-1308P-201ENST00000516817 103 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 HIGD1AP18-201ENST00000520730 278 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 AC093331.1-201ENST00000521474 169 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 HIGD1AP10-201ENST00000527837 282 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 CASP1-216ENST00000534497 825 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA1P55317 AC007687.1-201ENST00000602704 304 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms