Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 MTCYBP28-201ENST00000566728 1132 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A4P53420 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A4P53420 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 BNIP3P7-201ENST00000605641 516 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 AC242628.1-201ENST00000606810 391 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 MIR7111-201ENST00000619751 72 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 Z99129.2-201ENST00000619967 314 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 AL356321.1-201ENST00000621360 228 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 AP003485.2-201ENST00000623636 610 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 AL359693.1-201ENST00000614959 2407 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A4P53420 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
COL4A4P53420 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL4A4P53420 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL4A4P53420 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.4□□□□□ -1.86
COL4A4P53420 RNU6-304P-201ENST00000364855 107 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 MIR184-201ENST00000384962 84 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 RANP4-201ENST00000413361 655 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 ZNF92P1Y-201ENST00000415010 1191 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 GTF2IP23-201ENST00000423746 351 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 FTH1P1-201ENST00000437933 532 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 RPS12P18-201ENST00000442381 270 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 AL135938.1-201ENST00000443141 297 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 Z99127.3-201ENST00000448158 395 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.4□□□□□ -1.86
COL4A4P53420 RPL31P50-201ENST00000471002 296 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.4□□□□□ -1.86
COL4A4P53420 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.4□□□□□ -1.86
COL4A4P53420 MTND2P38-201ENST00000522536 667 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 AP001372.4-201ENST00000524889 472 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 EIF5A2P1-201ENST00000564027 460 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.4□□□□□ -1.86
COL4A4P53420 AC007619.2-201ENST00000605743 379 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 AL050303.3-201ENST00000613704 284 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 U7.8-201ENST00000619968 63 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 AC006249.1-201ENST00000621223 471 ntBASIC3.4□□□□□ -1.86
COL4A4P53420 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
COL4A4P53420 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL4A4P53420 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL4A4P53420 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL4A4P53420 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL4A4P53420 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.4□□□□□ -1.87
COL4A4P53420 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL4A4P53420 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.4□□□□□ -1.87
COL4A4P53420 AL132656.3-201ENST00000606384 1595 ntBASIC3.4□□□□□ -1.87
COL4A4P53420 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A4P53420 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
COL4A4P53420 RNU6-167P-201ENST00000384292 106 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 RAC1P3-201ENST00000416129 580 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 MTND1P31-201ENST00000449206 961 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 GTF2IP9-201ENST00000502460 301 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 SNORA70.19-201ENST00000516717 90 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 CIR1P1-201ENST00000524055 1133 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AL512310.1-201ENST00000548639 172 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A4P53420 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 AL451049.1-201ENST00000608672 497 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
COL4A4P53420 AC073476.4-201ENST00000628409 72 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A4P53420 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL4A4P53420 SEPT7P7-201ENST00000420492 1301 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AL136520.1-201ENST00000600311 1322 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL4A4P53420 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL4A4P53420 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL4A4P53420 RNU4-82P-201ENST00000362443 140 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 SNORA71.1-201ENST00000364523 117 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 RNA5SP296-201ENST00000410523 111 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 MTND4P15-201ENST00000437913 1033 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 AL158053.1-201ENST00000441503 453 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AC069277.2-201ENST00000454211 432 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL4A4P53420 AC015908.1-201ENST00000478739 476 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A4P53420 AC103783.1-201ENST00000520506 373 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A4P53420 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
COL4A4P53420 AC135279.1-201ENST00000543493 504 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.39□□□□□ -1.87
COL4A4P53420 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.39□□□□□ -1.87
COL4A4P53420 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.39□□□□□ -1.87
COL4A4P53420 uc_338.32-201ENST00000615087 172 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 AC068057.2-201ENST00000624047 895 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 IGHVIII-44-202ENST00000636235 289 ntBASIC3.39□□□□□ -1.87
COL4A4P53420 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
COL4A4P53420 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms