Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 RNU4-44P-201ENST00000363050 141 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 SNORA38.1-201ENST00000364172 131 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
HOXC9P31274 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC9P31274 RPS20P1-201ENST00000434853 354 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 HMGB1P45-201ENST00000435986 653 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC9P31274 AL358794.1-201ENST00000445689 381 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 YWHAQP9-201ENST00000445891 512 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AC244505.3-201ENST00000454598 187 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 AC005229.2-201ENST00000456995 399 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 RPL6P9-201ENST00000466502 859 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 RN7SL594P-201ENST00000470590 287 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AC084357.1-201ENST00000473404 255 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC9P31274 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC9P31274 PRELID3BP4-201ENST00000515476 571 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 AP000889.1-201ENST00000530968 660 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC9P31274 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC9P31274 AC092747.2-201ENST00000545069 983 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC9P31274 AC067852.3-201ENST00000589177 561 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 RNU4-5P-201ENST00000607255 135 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXC9P31274 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 AL354976.1-201ENST00000613843 387 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AC104985.3-201ENST00000623479 597 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 AL121594.5-201ENST00000631724 573 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC9P31274 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXC9P31274 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC9P31274 MFSD8-233ENST00000641482 4860 ntBASIC4.64□□□□□ -1.67
HOXC9P31274 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC9P31274 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXC9P31274 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
HOXC9P31274 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXC9P31274 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 RNU6-353P-201ENST00000364266 108 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 AL590290.1-201ENST00000405336 380 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC096664.2-201ENST00000411843 406 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC9P31274 RPL21P109-201ENST00000422213 475 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 NANOGP5-201ENST00000424456 877 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AL512649.1-201ENST00000428997 581 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 UBE2V1P1-201ENST00000430836 445 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 MOB1AP1-201ENST00000430903 535 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXC9P31274 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXC9P31274 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXC9P31274 AL050341.1-201ENST00000447743 313 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC9P31274 AC023598.1-201ENST00000472521 361 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXC9P31274 AC005912.1-201ENST00000495392 255 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC139783.2-201ENST00000504847 1145 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC113420.1-201ENST00000507903 571 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 RNU6-347P-201ENST00000516658 105 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 UBE2NP1-201ENST00000545592 458 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AL132857.1-201ENST00000555180 708 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.63□□□□□ -1.67
HOXC9P31274 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.63□□□□□ -1.67
HOXC9P31274 RPL21P12-201ENST00000559810 515 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AL606834.2-201ENST00000602954 668 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 RPP40P2-201ENST00000603596 712 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC139769.3-201ENST00000618383 175 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AP000770.2-201ENST00000623694 100 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AC127502.3-201ENST00000636170 1206 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 BX649567.1-201ENST00000642071 1134 ntBASIC4.63□□□□□ -1.67
HOXC9P31274 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.63□□□□□ -1.67
HOXC9P31274 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC9P31274 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.63□□□□□ -1.67
HOXC9P31274 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HOXC9P31274 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC9P31274 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC9P31274 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC9P31274 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC9P31274 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HOXC9P31274 RNU6-1339P-201ENST00000363574 91 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 RNU6-304P-201ENST00000364855 107 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 AC093719.1-202ENST00000392735 373 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 HSPE1P8-201ENST00000406997 288 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 SNORA11C-201ENST00000408532 129 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms