Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LMX1BO60663 RNU1-15P-201ENST00000353977 144 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 RNA5SP52-201ENST00000362448 134 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 Y_RNA.41-201ENST00000362646 102 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 RNU5D-1-201ENST00000363299 116 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.83□□□□□ -1.8
LMX1BO60663 MIR23B-201ENST00000384832 97 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 MIR23A-201ENST00000385245 73 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 TAF9BP1-201ENST00000396646 746 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 RNU2-42P-201ENST00000410697 113 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 RN7SKP142-201ENST00000411236 328 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.83□□□□□ -1.8
LMX1BO60663 RAD23BP2-201ENST00000416003 1207 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 CYCSP10-201ENST00000417973 294 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.83□□□□□ -1.8
LMX1BO60663 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.83□□□□□ -1.8
LMX1BO60663 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.83□□□□□ -1.8
LMX1BO60663 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LMX1BO60663 CYCSP46-201ENST00000423569 204 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.83□□□□□ -1.8
LMX1BO60663 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.83□□□□□ -1.8
LMX1BO60663 RPL21P110-201ENST00000433345 446 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 RPS25P9-201ENST00000435591 252 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC241584.1-201ENST00000438469 1241 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 HMGB3P9-201ENST00000441799 583 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 FHP1-201ENST00000442741 703 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC3.83□□□□□ -1.8
LMX1BO60663 GEMIN8P3-201ENST00000445417 720 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 NUTF2P3-201ENST00000448540 384 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 OR6C5P-201ENST00000452388 923 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 RNU7-27P-201ENST00000459281 62 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC015724.1-201ENST00000478577 156 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.83□□□□□ -1.8
LMX1BO60663 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC109458.1-201ENST00000508858 316 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.83□□□□□ -1.8
LMX1BO60663 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC022882.1-201ENST00000532142 501 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 GTF2IP8-201ENST00000560687 584 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.83□□□□□ -1.8
LMX1BO60663 RPL23AP97-201ENST00000568955 471 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 EIF1P4-201ENST00000572664 335 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC093227.2-201ENST00000589357 285 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.83□□□□□ -1.8
LMX1BO60663 U73023.1-201ENST00000603134 700 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC115286.1-201ENST00000604298 434 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC067959.1-201ENST00000604334 379 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.83□□□□□ -1.8
LMX1BO60663 AL139286.2-201ENST00000606838 396 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AL031775.1-201ENST00000607014 887 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AC100793.4-201ENST00000613683 429 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 ZYXP1-201ENST00000617638 118 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 AL161637.1-201ENST00000622380 412 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LMX1BO60663 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
LMX1BO60663 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.83□□□□□ -1.8
LMX1BO60663 AC005332.5-201ENST00000591222 2919 ntBASIC3.83□□□□□ -1.8
LMX1BO60663 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LMX1BO60663 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LMX1BO60663 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LMX1BO60663 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 RNU6-1119P-201ENST00000384349 108 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 RNU6-517P-201ENST00000384362 110 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LMX1BO60663 RPS26P8-201ENST00000393490 348 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 RNU2-16P-201ENST00000410712 136 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 SNORA74C-2-201ENST00000411179 201 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC011933.1-201ENST00000413334 321 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 CDK8P2-201ENST00000415020 547 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 RPL7AP25-201ENST00000423357 805 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 AL158073.1-201ENST00000426848 1104 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 RPS29P17-201ENST00000430795 166 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 MTND1P4-201ENST00000435196 415 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 LARP1BP3-201ENST00000437229 869 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 RPS7P5-201ENST00000441482 581 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 USP9YP29-201ENST00000445112 563 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC114755.5-201ENST00000447760 831 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 MTCYBP1-201ENST00000454315 1119 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC116533.1-201ENST00000459748 321 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 RPL21P126-201ENST00000470049 478 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms