Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AP004289.2-201ENST00000444413 1457 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 MIR375-201ENST00000362103 64 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 RNU5A-8P-201ENST00000364102 114 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 RNU4-20P-201ENST00000365601 151 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 SNORD116-29-201ENST00000384516 83 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 MIR558-201ENST00000384920 94 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 RNU2-29P-201ENST00000410423 189 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 COX6CP15-201ENST00000426313 211 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 OR4K11P-201ENST00000431829 904 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC012075.1-201ENST00000436549 580 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 RNU7-182P-201ENST00000459009 62 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC087879.1-201ENST00000474343 374 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC126389.1-201ENST00000477436 290 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC022215.1-201ENST00000481770 362 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC021382.1-201ENST00000483523 359 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC110792.2-201ENST00000510278 224 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC104057.1-201ENST00000515547 497 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 RN7SKP219-201ENST00000516825 296 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 RPL7P20-201ENST00000520308 745 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AL163153.1-201ENST00000554223 283 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 OR4K8P-201ENST00000578842 1048 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC011477.5-201ENST00000586571 259 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 UBE2L4-201ENST00000587688 464 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC124312.5-201ENST00000604451 268 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC090607.5-201ENST00000615692 224 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AL132822.1-201ENST00000617063 513 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 AC015908.5-201ENST00000623289 343 ntBASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.4□□□□□ -1.54
UBE3DQ7Z6J8 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
UBE3DQ7Z6J8 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AC009962.1-201ENST00000567327 3813 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AP001350.1-201ENST00000601906 1524 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 OR13C1P-202ENST00000641378 2919 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AL355834.1-201ENST00000556602 3965 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 HSPE1P11-201ENST00000339579 310 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 Y_RNA.133-201ENST00000363428 110 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AC117470.1-201ENST00000381974 330 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 RNU6-38P-201ENST00000384085 107 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AC005042.1-201ENST00000393397 800 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AL592114.1-201ENST00000403842 483 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 RPS3AP2-201ENST00000407190 754 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 RNU2-39P-201ENST00000410604 198 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 RN7SKP17-201ENST00000411242 351 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 RPS3P2-201ENST00000421346 701 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 AC092832.1-201ENST00000422934 400 ntBASIC5.39□□□□□ -1.55
UBE3DQ7Z6J8 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 223.5 ms