Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.76□□□□□ -1.49
LIG3P49916 AC114546.3-201ENST00000623582 1734 ntBASIC5.76□□□□□ -1.49
LIG3P49916 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.76□□□□□ -1.49
LIG3P49916 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.75□□□□□ -1.49
LIG3P49916 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
LIG3P49916 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.75□□□□□ -1.49
LIG3P49916 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.75□□□□□ -1.49
LIG3P49916 MIR323A-201ENST00000362199 86 ntBASIC5.75□□□□□ -1.49
LIG3P49916 RNU6-1097P-201ENST00000363586 107 ntBASIC5.75□□□□□ -1.49
LIG3P49916 RNA5SP242-201ENST00000364171 118 ntBASIC5.75□□□□□ -1.49
LIG3P49916 SNORA69-201ENST00000383895 132 ntBASIC5.75□□□□□ -1.49
LIG3P49916 RNU1-136P-201ENST00000384181 164 ntBASIC5.75□□□□□ -1.49
LIG3P49916 Y_RNA.548-201ENST00000384656 105 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AL356057.2-201ENST00000403318 432 ntBASIC5.75□□□□□ -1.49
LIG3P49916 ARL4AP5-201ENST00000404372 599 ntBASIC5.75□□□□□ -1.49
LIG3P49916 OR2AT2P-201ENST00000413438 905 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC007390.1-201ENST00000415722 356 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.75□□□□□ -1.49
LIG3P49916 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5.75□□□□□ -1.49
LIG3P49916 CHEK2P5-201ENST00000423877 246 ntBASIC5.75□□□□□ -1.49
LIG3P49916 GPR143P-201ENST00000434155 205 ntBASIC5.75□□□□□ -1.49
LIG3P49916 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.75□□□□□ -1.49
LIG3P49916 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.75□□□□□ -1.49
LIG3P49916 AC006335.2-201ENST00000437993 330 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AP000281.1-201ENST00000444036 316 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC5.75□□□□□ -1.49
LIG3P49916 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.75□□□□□ -1.49
LIG3P49916 snoU13.8-201ENST00000458890 104 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AL136126.1-201ENST00000473603 402 ntBASIC5.75□□□□□ -1.49
LIG3P49916 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.75□□□□□ -1.49
LIG3P49916 RN7SL717P-201ENST00000478343 297 ntBASIC5.75□□□□□ -1.49
LIG3P49916 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.75□□□□□ -1.49
LIG3P49916 RN7SL570P-201ENST00000484405 292 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.75□□□□□ -1.49
LIG3P49916 FTH1P24-201ENST00000503502 462 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC111000.3-201ENST00000508057 576 ntBASIC5.75□□□□□ -1.49
LIG3P49916 MTND6P2-201ENST00000512226 524 ntBASIC5.75□□□□□ -1.49
LIG3P49916 RPS27AP18-201ENST00000515536 459 ntBASIC5.75□□□□□ -1.49
LIG3P49916 RNU6-615P-201ENST00000516065 106 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC022616.3-201ENST00000523940 148 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC5.75□□□□□ -1.49
LIG3P49916 AC007424.1-203ENST00000554613 687 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AC018638.8-201ENST00000588755 281 ntBASIC5.75□□□□□ -1.49
LIG3P49916 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.75□□□□□ -1.49
LIG3P49916 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 AC013553.2-201ENST00000604244 589 ntBASIC5.75□□□□□ -1.49
LIG3P49916 DISC2.1-201ENST00000612827 205 ntBASIC5.75□□□□□ -1.49
LIG3P49916 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.75□□□□□ -1.49
LIG3P49916 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 MTND5P33-201ENST00000571250 1450 ntBASIC5.75□□□□□ -1.49
LIG3P49916 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
LIG3P49916 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 AC105074.1-201ENST00000623380 3095 ntBASIC5.75□□□□□ -1.49
LIG3P49916 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIG3P49916 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 RNA5SP46-201ENST00000362370 120 ntBASIC5.74□□□□□ -1.49
LIG3P49916 RNU6-845P-201ENST00000362578 103 ntBASIC5.74□□□□□ -1.49
LIG3P49916 MIR323B-201ENST00000385269 82 ntBASIC5.74□□□□□ -1.49
LIG3P49916 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.74□□□□□ -1.49
LIG3P49916 UQCRBP1-201ENST00000421129 336 ntBASIC5.74□□□□□ -1.49
LIG3P49916 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG3P49916 RGS17P1-201ENST00000423358 553 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.74□□□□□ -1.49
LIG3P49916 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG3P49916 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 BNIP3P2-201ENST00000441221 577 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC114495.1-201ENST00000441274 436 ntBASIC5.74□□□□□ -1.49
LIG3P49916 EEF1B2P6-201ENST00000445713 673 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG3P49916 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 AC023141.9-201ENST00000458734 412 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC063943.1-201ENST00000465434 453 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC105384.2-201ENST00000508433 640 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC106872.4-201ENST00000510050 523 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 SNORA40.12-201ENST00000516329 111 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 HAUS8P1-201ENST00000549005 542 ntBASIC5.74□□□□□ -1.49
LIG3P49916 IGBP1P1-201ENST00000554337 1009 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms