Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.85□□□□□ -1.79
LMX1BO60663 MIR7973-1-201ENST00000614683 76 ntBASIC3.85□□□□□ -1.79
LMX1BO60663 SNX18P1Y-201ENST00000616231 511 ntBASIC3.85□□□□□ -1.79
LMX1BO60663 AL590240.3-201ENST00000621416 943 ntBASIC3.85□□□□□ -1.79
LMX1BO60663 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.85□□□□□ -1.79
LMX1BO60663 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.85□□□□□ -1.79
LMX1BO60663 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.85□□□□□ -1.79
LMX1BO60663 AC107027.3-201ENST00000565095 3473 ntBASIC3.85□□□□□ -1.79
LMX1BO60663 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
LMX1BO60663 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LMX1BO60663 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LMX1BO60663 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LMX1BO60663 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
LMX1BO60663 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.85□□□□□ -1.79
LMX1BO60663 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LMX1BO60663 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.84□□□□□ -1.79
LMX1BO60663 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 Z95327.2-201ENST00000414579 1873 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 DDX18P3-201ENST00000404856 2007 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
LMX1BO60663 AL121657.1-201ENST00000327215 531 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 Y_RNA.3-201ENST00000362331 103 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 RNA5SP307-201ENST00000362863 116 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 RNA5SP515-201ENST00000364570 118 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 RNU1-64P-201ENST00000365443 163 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
LMX1BO60663 AL161909.1-201ENST00000397390 712 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 MIR1911-201ENST00000410783 80 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 RNU2-6P-201ENST00000411404 190 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.84□□□□□ -1.79
LMX1BO60663 GSTM3P2-201ENST00000412746 530 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 Z99497.1-201ENST00000421282 135 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AL356387.2-201ENST00000422272 243 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.84□□□□□ -1.79
LMX1BO60663 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.84□□□□□ -1.79
LMX1BO60663 AC073335.1-201ENST00000427776 363 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AL050321.1-201ENST00000432363 400 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.84□□□□□ -1.79
LMX1BO60663 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.84□□□□□ -1.79
LMX1BO60663 HLA-N-201ENST00000437516 135 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC122718.1-201ENST00000439448 744 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 NPM1P49-201ENST00000448027 714 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.84□□□□□ -1.79
LMX1BO60663 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 PNPLA4P1-201ENST00000458328 305 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 FAM133DP-201ENST00000464802 691 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 RPL7P1-201ENST00000468161 747 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 RPL7P9-201ENST00000468715 747 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 RPS26P28-201ENST00000470806 348 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC022795.1-201ENST00000473808 480 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.84□□□□□ -1.79
LMX1BO60663 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.84□□□□□ -1.79
LMX1BO60663 AC010460.1-201ENST00000507087 466 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LMX1BO60663 PPBPP1-201ENST00000510807 373 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 IGLVIV-65-201ENST00000517313 360 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.84□□□□□ -1.79
LMX1BO60663 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.84□□□□□ -1.79
LMX1BO60663 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.84□□□□□ -1.79
LMX1BO60663 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.84□□□□□ -1.79
LMX1BO60663 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.84□□□□□ -1.79
LMX1BO60663 AC012435.1-202ENST00000568772 240 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC074051.3-201ENST00000570238 358 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.84□□□□□ -1.79
LMX1BO60663 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.84□□□□□ -1.79
LMX1BO60663 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.84□□□□□ -1.79
LMX1BO60663 MIR3611-201ENST00000584484 83 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC107982.3-201ENST00000584957 985 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 MIR3138-201ENST00000585238 82 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC011477.5-201ENST00000586571 259 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC008507.1-201ENST00000587506 734 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 IPO5P1-202ENST00000600039 287 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 NTAN1P1-201ENST00000603150 646 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AP003973.1-201ENST00000604639 691 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 ARF4P1-201ENST00000605447 541 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC012409.3-201ENST00000611343 981 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC022306.2-201ENST00000617563 647 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 MIR6891-201ENST00000618788 93 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC069209.1-201ENST00000619282 651 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AL031667.3-201ENST00000620124 655 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC092192.1-201ENST00000633154 1018 ntBASIC3.84□□□□□ -1.79
LMX1BO60663 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
LMX1BO60663 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
LMX1BO60663 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
LMX1BO60663 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
LMX1BO60663 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.84□□□□□ -1.8
LMX1BO60663 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LMX1BO60663 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LMX1BO60663 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.83□□□□□ -1.8
LMX1BO60663 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
LMX1BO60663 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LMX1BO60663 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
LMX1BO60663 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms