Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC068722.2-201ENST00000618734 544 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 PCAT14-202ENST00000627127 3935 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AC004817.4-201ENST00000602396 3625 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 AL031119.1-201ENST00000404707 1879 ntBASIC4.92□□□□□ -1.62
TDP1Q9NUW8 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TDP1Q9NUW8 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC026951.1-201ENST00000559530 2459 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC009643.2-201ENST00000603543 1448 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC092447.7-201ENST00000422212 1621 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC139713.2-214ENST00000642059 1811 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 SNORA51.6-201ENST00000384151 125 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 OR6C69P-201ENST00000394268 893 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 EIF5P1-201ENST00000400019 1231 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 HMGN2P27-201ENST00000427352 270 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 CEACAMP1-201ENST00000434624 1035 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 MTND1P4-201ENST00000435196 415 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 SNRPEP7-201ENST00000438350 220 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AL031667.1-201ENST00000440222 725 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AL357520.1-201ENST00000441557 453 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 H2AFZP5-201ENST00000446960 382 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 RPL7P22-201ENST00000466005 733 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC005726.1-201ENST00000494679 427 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 MTND2P33-201ENST00000506452 1031 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 RNA5SP230-201ENST00000517039 122 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AP002748.2-201ENST00000528671 348 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AP004247.1-201ENST00000531556 1289 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC013828.2-201ENST00000532487 235 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC068587.4-201ENST00000533893 186 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC093249.4-201ENST00000564755 259 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 MIR4277-201ENST00000578298 84 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AP005119.2-201ENST00000579735 1105 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC112187.2-201ENST00000604345 283 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC097468.3-201ENST00000607956 456 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC138932.5-201ENST00000617759 563 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 MIR6864-201ENST00000617935 70 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC138965.3-201ENST00000623875 498 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 AC073136.1-201ENST00000449426 2884 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
TDP1Q9NUW8 PHKBP1-201ENST00000450951 1951 ntBASIC4.91□□□□□ -1.62
TDP1Q9NUW8 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.9□□□□□ -1.62
TDP1Q9NUW8 AL592148.3-201ENST00000608771 2646 ntBASIC4.9□□□□□ -1.62
TDP1Q9NUW8 RNU5E-5P-201ENST00000365379 116 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 Y_RNA.516-201ENST00000384541 124 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 U8.14-201ENST00000390843 143 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 DHFRP6-201ENST00000401776 268 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.9□□□□□ -1.63
TDP1Q9NUW8 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.9□□□□□ -1.63
TDP1Q9NUW8 AL121878.1-201ENST00000418638 859 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 OFD1P18Y-201ENST00000420889 959 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 AC010975.2-201ENST00000427781 588 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.9□□□□□ -1.63
TDP1Q9NUW8 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.9□□□□□ -1.63
TDP1Q9NUW8 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.9□□□□□ -1.63
TDP1Q9NUW8 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.9□□□□□ -1.63
TDP1Q9NUW8 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.9□□□□□ -1.63
TDP1Q9NUW8 RPL37P21-201ENST00000435890 276 ntBASIC4.9□□□□□ -1.63
TDP1Q9NUW8 AC105402.2-201ENST00000438503 358 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 148.5 ms