Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 GABPAP-201ENST00000419271 1356 ntBASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 ZNF37BP-203ENST00000452306 1352 ntBASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 AL512283.1-201ENST00000606756 1384 ntBASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HDDC3Q8N4P3 AL355578.1-201ENST00000607405 1328 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RNU6-600P-201ENST00000362524 99 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 SNORA7.2-201ENST00000364446 145 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RNU6-335P-201ENST00000364563 113 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 MIR513A2-201ENST00000385249 127 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RPL21P17-201ENST00000397467 475 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RPS29P4-201ENST00000414733 161 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RAC1P3-201ENST00000416129 580 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 PTP4A1P5-201ENST00000420305 455 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL139247.1-201ENST00000422768 325 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RPP40P1-201ENST00000426762 456 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC114973.1-201ENST00000429057 632 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 NANOGP6-201ENST00000429190 847 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 HMGN2P31-201ENST00000432430 273 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 GXYLT1P1-201ENST00000446657 490 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL451050.1-201ENST00000450126 415 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RPL21P11-201ENST00000461458 483 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 SYPL1P1-201ENST00000473622 768 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC106872.2-201ENST00000494303 480 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 MTCO2P9-201ENST00000503214 694 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC093853.1-201ENST00000515689 483 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 MTCYBP41-201ENST00000528913 1123 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 OR4C2P-201ENST00000530855 1064 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RPL21P12-201ENST00000559810 515 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC022968.1-201ENST00000567372 442 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 ZNF415P1-201ENST00000582279 1166 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AF131215.7-201ENST00000602443 707 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC009948.4-201ENST00000604692 675 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 U3.45-201ENST00000607547 219 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC124312.6-202ENST00000623624 418 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 AC048347.1-201ENST00000624621 427 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 MTCO1P4-201ENST00000520516 1409 ntBASIC3.95□□□□□ -1.78
HDDC3Q8N4P3 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AL359893.1-201ENST00000447628 1580 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 MTND5P1-201ENST00000445440 1375 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 RNU6-441P-201ENST00000384545 106 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 MIR634-201ENST00000385208 97 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AL513174.1-201ENST00000423182 629 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 DEFB130D-201ENST00000426866 237 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AC104306.1-201ENST00000449702 371 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 CYCSP53-201ENST00000455540 265 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 NAP1L1P3-201ENST00000462291 880 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AC017037.1-201ENST00000508460 471 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 SNORA70.14-201ENST00000516205 110 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 RN7SKP116-201ENST00000516902 319 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 IGKV2D-36-201ENST00000518643 226 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AC008802.1-201ENST00000519121 791 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AP003049.1-201ENST00000529418 457 ntBASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.94□□□□□ -1.78
HDDC3Q8N4P3 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms