Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 CEP170P1-201ENST00000502249 4587 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 XPOTP1-201ENST00000443317 2398 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 RNU6-353P-201ENST00000364266 108 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 ATP5F1P4-201ENST00000397288 746 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL603865.2-201ENST00000401679 213 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 MIR1193-201ENST00000408109 78 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 SNORA3.3-201ENST00000408712 125 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 RNU6-272P-201ENST00000411028 104 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC092638.1-201ENST00000411966 1275 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC004987.3-201ENST00000413879 771 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 RPS15AP6-201ENST00000420703 385 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC012497.1-201ENST00000429392 575 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 YWHAZP8-201ENST00000436935 731 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 RPS29P7-201ENST00000439662 171 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC004865.1-201ENST00000442276 1003 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 RNF2P1-201ENST00000442955 1010 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL500522.2-201ENST00000448562 343 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AP000873.1-201ENST00000463987 400 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC108941.1-201ENST00000502853 530 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 RNU6-202P-201ENST00000515998 96 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 Vault.1-201ENST00000516474 102 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 RN7SKP82-201ENST00000516786 223 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 MTND5P21-201ENST00000531961 522 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC084824.1-201ENST00000550917 1005 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 RN7SL703P-201ENST00000578485 302 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC022916.3-201ENST00000592961 742 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC008687.2-201ENST00000597865 520 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 VN1R85P-201ENST00000601587 426 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC006254.3-201ENST00000603353 884 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL365503.1-201ENST00000605247 905 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL512427.1-201ENST00000618593 349 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AL354798.1-201ENST00000622505 329 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 FP236240.3-201ENST00000623061 327 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AF001550.2-201ENST00000636643 217 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 BX649567.1-201ENST00000642071 1134 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 DCAF13P3-201ENST00000561147 1334 ntBASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
SKA3Q8IX90 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SKA3Q8IX90 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 MIR30B-201ENST00000384850 88 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC136624.1-201ENST00000400791 413 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 ZNF602P-201ENST00000405929 924 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 UBE2V1P9-201ENST00000414760 368 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 RPL31P12-201ENST00000422587 358 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC234064.1-201ENST00000436312 247 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SKA3Q8IX90 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.35□□□□□ -1.87
SKA3Q8IX90 SNORD108-201ENST00000459332 71 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 AC091959.2-201ENST00000477363 321 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 RN7SL132P-201ENST00000478131 296 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 GAPDHP36-201ENST00000480688 918 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 RPL23AP44-201ENST00000482216 473 ntBASIC3.35□□□□□ -1.87
SKA3Q8IX90 HMGB1P38-201ENST00000490557 577 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms