Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 MTCO2P1-201ENST00000424648 477 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 RPL23AP82-202ENST00000427528 469 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 CYCSP43-201ENST00000438233 310 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.3□□□□□ -1.88
RFX4Q33E94 CENPBD1P1-201ENST00000464061 469 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.3□□□□□ -1.88
RFX4Q33E94 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.3□□□□□ -1.88
RFX4Q33E94 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AC090071.1-201ENST00000507713 644 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 PHBP14-201ENST00000512887 367 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AC083923.1-201ENST00000523708 376 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 OR5D17P-201ENST00000531492 978 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AC139103.1-201ENST00000534696 1030 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AL136520.1-202ENST00000555494 763 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 PARP1P2-201ENST00000556806 195 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AC090751.1-201ENST00000566966 267 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AGGF1P6-201ENST00000569213 976 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AP000919.1-202ENST00000581139 1264 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
RFX4Q33E94 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.3□□□□□ -1.88
RFX4Q33E94 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.3□□□□□ -1.88
RFX4Q33E94 PCNAP1-202ENST00000595299 752 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AL158211.2-201ENST00000607282 395 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 AC107294.3-201ENST00000609211 526 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
RFX4Q33E94 XIST_intron.1-201ENST00000619444 68 ntBASIC3.3□□□□□ -1.88
RFX4Q33E94 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.3□□□□□ -1.88
RFX4Q33E94 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.3□□□□□ -1.88
RFX4Q33E94 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
RFX4Q33E94 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.3□□□□□ -1.88
RFX4Q33E94 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.3□□□□□ -1.88
RFX4Q33E94 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
RFX4Q33E94 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
RFX4Q33E94 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.29□□□□□ -1.88
RFX4Q33E94 MIR16-2-201ENST00000362117 81 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 RNA5SP27-201ENST00000363839 119 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 RNA5SP283-201ENST00000365604 119 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 SNORA70E-201ENST00000384492 135 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 SNORA40.4-201ENST00000390971 128 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AC017079.2-201ENST00000416102 485 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX4Q33E94 GTF2IP23-201ENST00000423746 351 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 SDCBPP2-201ENST00000424643 885 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 UBE2D3P3-201ENST00000426992 425 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AL591419.1-201ENST00000427423 339 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AC008065.1-201ENST00000428525 348 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC023347.2-201ENST00000433994 462 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 RN7SL385P-201ENST00000468873 276 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 RPL21P47-201ENST00000483696 477 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC021146.5-201ENST00000503544 545 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 KCTD9P5-201ENST00000504141 1170 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC010460.1-201ENST00000507087 466 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 PTGES3P3-201ENST00000511479 482 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC008494.2-201ENST00000514544 370 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 SNORA64.4-201ENST00000516632 81 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 RNU4-60P-201ENST00000517239 135 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AC107934.2-201ENST00000518653 310 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX4Q33E94 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AC098483.2-201ENST00000603158 454 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AC112503.1-201ENST00000608436 391 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 VN1R9P-201ENST00000614184 867 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 ZYXP1-201ENST00000617638 118 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AL357559.1-201ENST00000622228 274 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RFX4Q33E94 MFSD8-233ENST00000641482 4860 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.29□□□□□ -1.88
RFX4Q33E94 AL592494.2-201ENST00000425455 1548 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 AC007656.2-201ENST00000624902 4547 ntBASIC3.29□□□□□ -1.88
RFX4Q33E94 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
RFX4Q33E94 AC091152.2-201ENST00000591628 2569 ntBASIC3.28□□□□□ -1.88
RFX4Q33E94 AC104446.1-201ENST00000613728 1321 ntBASIC3.28□□□□□ -1.88
RFX4Q33E94 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
RFX4Q33E94 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
RFX4Q33E94 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RFX4Q33E94 ENSAP3-201ENST00000312710 333 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms