Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 LINC02471-203ENST00000641941 4752 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HSPG2P98160 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
HSPG2P98160 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
HSPG2P98160 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC1.83□□□□□ -2.12
HSPG2P98160 AC126124.2-201ENST00000413542 321 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC1.83□□□□□ -2.12
HSPG2P98160 RPL9P32-201ENST00000464118 620 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC1.83□□□□□ -2.12
HSPG2P98160 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC1.83□□□□□ -2.12
HSPG2P98160 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.83□□□□□ -2.12
HSPG2P98160 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC1.83□□□□□ -2.12
HSPG2P98160 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC1.83□□□□□ -2.12
HSPG2P98160 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
HSPG2P98160 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
HSPG2P98160 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
HSPG2P98160 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HSPG2P98160 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC1.83□□□□□ -2.12
HSPG2P98160 RNA5SP31-201ENST00000411144 127 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC1.83□□□□□ -2.12
HSPG2P98160 RPL12P26-201ENST00000452430 487 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC1.83□□□□□ -2.12
HSPG2P98160 RNA5SP148-201ENST00000516527 94 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 AC078814.3-201ENST00000553036 491 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC1.83□□□□□ -2.12
HSPG2P98160 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 AC017071.1-201ENST00000564407 2204 ntBASIC1.83□□□□□ -2.12
HSPG2P98160 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 RNU6-548P-201ENST00000517083 115 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 RN7SKP283-201ENST00000517197 270 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 WDR61-205ENST00000558459 884 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 OR7A8P-201ENST00000595427 913 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC1.82□□□□□ -2.12
HSPG2P98160 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC008725.1-201ENST00000605123 2263 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 RNA5SP289-201ENST00000362332 137 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 RNU6-316P-201ENST00000391027 107 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 AC104297.1-201ENST00000393779 870 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 SNORD39.4-201ENST00000620099 78 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC097634.1-201ENST00000604491 2467 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 IDE-202ENST00000371581 4480 ntTSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HSPG2P98160 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
HSPG2P98160 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 RNU6-859P-201ENST00000362728 107 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 RNU6-283P-201ENST00000364788 107 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 SNORD15B-201ENST00000384714 146 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 AP001646.1-201ENST00000527936 915 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC022882.1-201ENST00000532142 501 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 DNAJC19P3-201ENST00000594491 331 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
HSPG2P98160 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
HSPG2P98160 SNORD114-30-201ENST00000364448 72 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 HMGB3P14-201ENST00000494195 599 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 ASNSP4-201ENST00000511103 447 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.82□□□□□ -2.12
HSPG2P98160 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC1.82□□□□□ -2.12
HSPG2P98160 AL049840.6-202ENST00000603373 279 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 MIR4727-201ENST00000622232 55 ntBASIC1.82□□□□□ -2.12
HSPG2P98160 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 AC009487.4-201ENST00000624969 3585 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 NEAT1-202ENST00000501122 22743 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HSPG2P98160 RN7SKP210-201ENST00000459176 261 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 RPL23AP71-201ENST00000470966 469 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC1.81□□□□□ -2.12
HSPG2P98160 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.81□□□□□ -2.12
HSPG2P98160 uc_338.32-201ENST00000615087 172 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 RNA5SP508-201ENST00000411327 119 ntBASIC1.81□□□□□ -2.12
HSPG2P98160 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC1.81□□□□□ -2.12
HSPG2P98160 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms