Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-551P-201ENST00000516661 103 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC104997.1-201ENST00000519761 717 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 OR4V1P-201ENST00000525394 1140 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 CKS1BP3-201ENST00000600888 237 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 SNORA51-201ENST00000606420 132 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC092354.2-201ENST00000607786 514 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC005021.1-201ENST00000608730 355 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.02□□□□□ -1.93
FOXA1P55317 RPL23AP61-201ENST00000623642 466 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC004777.1-201ENST00000624317 287 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
FOXA1P55317 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA1P55317 AC000367.1-201ENST00000452711 1766 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA1P55317 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA1P55317 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
FOXA1P55317 MIR449B-201ENST00000384995 97 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 RN7SKP222-201ENST00000410651 315 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.01□□□□□ -1.93
FOXA1P55317 AIMP1P1-201ENST00000418670 937 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.01□□□□□ -1.93
FOXA1P55317 AC073464.3-201ENST00000422564 712 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.01□□□□□ -1.93
FOXA1P55317 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA1P55317 AC097713.2-201ENST00000430199 356 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AL159987.2-201ENST00000432754 307 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AC007563.3-201ENST00000433233 371 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AL353705.1-201ENST00000433468 480 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.01□□□□□ -1.93
FOXA1P55317 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.01□□□□□ -1.93
FOXA1P55317 ELOCP23-201ENST00000452014 332 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 RPL9P32-201ENST00000464118 620 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 PRDX3P4-201ENST00000470828 747 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AC078785.3-201ENST00000476607 425 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AC073522.1-201ENST00000483312 377 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.01□□□□□ -1.93
FOXA1P55317 PHBP14-201ENST00000512887 367 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AC108471.1-201ENST00000513977 287 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.01□□□□□ -1.93
FOXA1P55317 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.01□□□□□ -1.93
FOXA1P55317 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 AC008739.3-201ENST00000603262 127 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 AC006254.3-201ENST00000603353 884 ntBASIC3.01□□□□□ -1.93
FOXA1P55317 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA1P55317 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.01□□□□□ -1.93
FOXA1P55317 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3□□□□□ -1.93
FOXA1P55317 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA1P55317 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3□□□□□ -1.93
FOXA1P55317 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA1P55317 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3□□□□□ -1.93
FOXA1P55317 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
FOXA1P55317 AC234772.1-201ENST00000377927 937 ntBASIC3□□□□□ -1.93
FOXA1P55317 RNU6-152P-201ENST00000384037 107 ntBASIC3□□□□□ -1.93
FOXA1P55317 AC048351.1-201ENST00000420064 602 ntBASIC3□□□□□ -1.93
FOXA1P55317 AL356806.1-201ENST00000422524 916 ntBASIC3□□□□□ -1.93
FOXA1P55317 Z99127.2-201ENST00000441426 334 ntBASIC3□□□□□ -1.93
FOXA1P55317 RPL6P5-201ENST00000445678 828 ntBASIC3□□□□□ -1.93
FOXA1P55317 PDSS1P2-201ENST00000449397 678 ntBASIC3□□□□□ -1.93
FOXA1P55317 HMGB3P21-201ENST00000452483 547 ntBASIC3□□□□□ -1.93
FOXA1P55317 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3□□□□□ -1.93
FOXA1P55317 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3□□□□□ -1.93
FOXA1P55317 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3□□□□□ -1.93
FOXA1P55317 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3□□□□□ -1.93
FOXA1P55317 PCNAP1-201ENST00000505363 709 ntBASIC3□□□□□ -1.93
FOXA1P55317 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3□□□□□ -1.93
FOXA1P55317 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3□□□□□ -1.93
FOXA1P55317 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC3□□□□□ -1.93
FOXA1P55317 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3□□□□□ -1.93
FOXA1P55317 AC011611.1-201ENST00000552179 197 ntBASIC3□□□□□ -1.93
FOXA1P55317 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3□□□□□ -1.93
FOXA1P55317 PSMA6P4-201ENST00000603247 718 ntBASIC3□□□□□ -1.93
FOXA1P55317 AC022387.2-201ENST00000604050 448 ntBASIC3□□□□□ -1.93
FOXA1P55317 AC244100.1-202ENST00000621554 382 ntBASIC3□□□□□ -1.93
FOXA1P55317 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA1P55317 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3□□□□□ -1.93
FOXA1P55317 AC005183.1-201ENST00000603687 1979 ntBASIC3□□□□□ -1.93
FOXA1P55317 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
FOXA1P55317 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
FOXA1P55317 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA1P55317 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA1P55317 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms