Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PPIAP20-201ENST00000449839 135 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC004129.2-201ENST00000457229 287 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC245028.2-201ENST00000458673 253 ntBASIC5.77□□□□□ -1.49
LIG3P49916 MTCO2P29-201ENST00000465212 189 ntBASIC5.77□□□□□ -1.49
LIG3P49916 RN7SL174P-201ENST00000475578 289 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC006539.1-201ENST00000481419 501 ntBASIC5.77□□□□□ -1.49
LIG3P49916 ATP5LP5-201ENST00000483050 299 ntBASIC5.77□□□□□ -1.49
LIG3P49916 RPL23AP72-201ENST00000492447 435 ntBASIC5.77□□□□□ -1.49
LIG3P49916 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.77□□□□□ -1.49
LIG3P49916 RN7SL101P-201ENST00000496350 279 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC093767.1-201ENST00000504523 156 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC021678.3-201ENST00000517893 476 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.77□□□□□ -1.49
LIG3P49916 AP000907.2-201ENST00000530827 353 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.77□□□□□ -1.49
LIG3P49916 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.77□□□□□ -1.49
LIG3P49916 AC127024.5-201ENST00000580085 462 ntBASIC5.77□□□□□ -1.49
LIG3P49916 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.77□□□□□ -1.49
LIG3P49916 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 MIR6729-201ENST00000618194 65 ntBASIC5.77□□□□□ -1.49
LIG3P49916 AC024940.5-201ENST00000622889 474 ntBASIC5.77□□□□□ -1.49
LIG3P49916 MIR4302-201ENST00000638058 60 ntBASIC5.77□□□□□ -1.49
LIG3P49916 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.77□□□□□ -1.49
LIG3P49916 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.77□□□□□ -1.49
LIG3P49916 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
LIG3P49916 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
LIG3P49916 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 AC006026.1-201ENST00000444025 1803 ntBASIC5.76□□□□□ -1.49
LIG3P49916 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.76□□□□□ -1.49
LIG3P49916 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
LIG3P49916 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
LIG3P49916 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 AL159987.1-201ENST00000347911 293 ntBASIC5.76□□□□□ -1.49
LIG3P49916 SNORA64.1-201ENST00000362600 132 ntBASIC5.76□□□□□ -1.49
LIG3P49916 Y_RNA.157-201ENST00000363638 102 ntBASIC5.76□□□□□ -1.49
LIG3P49916 RNU6-108P-201ENST00000365558 107 ntBASIC5.76□□□□□ -1.49
LIG3P49916 Y_RNA.381-201ENST00000365666 102 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC068050.1-201ENST00000394891 380 ntBASIC5.76□□□□□ -1.49
LIG3P49916 RN7SKP206-201ENST00000410823 293 ntBASIC5.76□□□□□ -1.49
LIG3P49916 RNU6-373P-201ENST00000411247 98 ntBASIC5.76□□□□□ -1.49
LIG3P49916 ELOCP4-201ENST00000420090 333 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC5.76□□□□□ -1.49
LIG3P49916 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.76□□□□□ -1.49
LIG3P49916 AC006548.1-201ENST00000427470 102 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AL590233.1-201ENST00000430017 456 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.76□□□□□ -1.49
LIG3P49916 AL606489.2-201ENST00000433886 234 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.76□□□□□ -1.49
LIG3P49916 GAPDHP48-201ENST00000436626 961 ntBASIC5.76□□□□□ -1.49
LIG3P49916 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.76□□□□□ -1.49
LIG3P49916 AC096775.1-201ENST00000437724 448 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.76□□□□□ -1.49
LIG3P49916 EEF1A1P1-201ENST00000447052 739 ntBASIC5.76□□□□□ -1.49
LIG3P49916 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
LIG3P49916 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC5.76□□□□□ -1.49
LIG3P49916 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.76□□□□□ -1.49
LIG3P49916 AC139783.2-201ENST00000504847 1145 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.76□□□□□ -1.49
LIG3P49916 RNU6-835P-201ENST00000516974 104 ntBASIC5.76□□□□□ -1.49
LIG3P49916 SNORA43.3-201ENST00000517240 103 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC5.76□□□□□ -1.49
LIG3P49916 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.76□□□□□ -1.49
LIG3P49916 AC107934.1-201ENST00000522215 217 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AP003072.2-201ENST00000527756 676 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.76□□□□□ -1.49
LIG3P49916 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.76□□□□□ -1.49
LIG3P49916 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.76□□□□□ -1.49
LIG3P49916 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 AC096996.1-201ENST00000563813 325 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.76□□□□□ -1.49
LIG3P49916 AC055876.1-202ENST00000567053 138 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC010547.6-201ENST00000571789 193 ntBASIC5.76□□□□□ -1.49
LIG3P49916 RPS3AP23-202ENST00000574601 686 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.76□□□□□ -1.49
LIG3P49916 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.76□□□□□ -1.49
LIG3P49916 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.76□□□□□ -1.49
LIG3P49916 AC011445.2-201ENST00000599274 173 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC025449.1-201ENST00000603896 529 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AL355472.4-201ENST00000610233 626 ntBASIC5.76□□□□□ -1.49
LIG3P49916 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 RNA5SP440-201ENST00000612665 119 ntBASIC5.76□□□□□ -1.49
LIG3P49916 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC009318.4-201ENST00000620496 486 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AP002505.2-201ENST00000623585 696 ntBASIC5.76□□□□□ -1.49
LIG3P49916 CR381572.1-201ENST00000625098 102 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC138649.5-201ENST00000637456 137 ntBASIC5.76□□□□□ -1.49
LIG3P49916 AC093775.1-201ENST00000624154 1868 ntBASIC5.76□□□□□ -1.49
LIG3P49916 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
LIG3P49916 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms