Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIR4716-201ENST00000579628 84 ntBASIC3.75□□□□□ -1.81
SOX3P41225 AP001269.3-201ENST00000588718 329 ntBASIC3.75□□□□□ -1.81
SOX3P41225 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SOX3P41225 AC114878.2-201ENST00000604863 1251 ntBASIC3.75□□□□□ -1.81
SOX3P41225 MIR486-1-201ENST00000612171 68 ntBASIC3.75□□□□□ -1.81
SOX3P41225 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SOX3P41225 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.75□□□□□ -1.81
SOX3P41225 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SOX3P41225 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.75□□□□□ -1.81
SOX3P41225 AC097520.1-201ENST00000624435 385 ntBASIC3.75□□□□□ -1.81
SOX3P41225 AL773545.4-201ENST00000637262 310 ntBASIC3.75□□□□□ -1.81
SOX3P41225 AL513478.4-201ENST00000641636 310 ntBASIC3.75□□□□□ -1.81
SOX3P41225 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.75□□□□□ -1.81
SOX3P41225 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
SOX3P41225 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
SOX3P41225 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.75□□□□□ -1.81
SOX3P41225 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SOX3P41225 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SOX3P41225 MTND4P8-201ENST00000514997 1362 ntBASIC3.75□□□□□ -1.81
SOX3P41225 MARK2P15-201ENST00000432204 2186 ntBASIC3.75□□□□□ -1.81
SOX3P41225 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SOX3P41225 DCAF13P3-201ENST00000561147 1334 ntBASIC3.74□□□□□ -1.81
SOX3P41225 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 AC016716.1-201ENST00000265882 708 ntBASIC3.74□□□□□ -1.81
SOX3P41225 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.74□□□□□ -1.81
SOX3P41225 PGBD4P8-201ENST00000412993 562 ntBASIC3.74□□□□□ -1.81
SOX3P41225 RAC1P3-201ENST00000416129 580 ntBASIC3.74□□□□□ -1.81
SOX3P41225 RPS24P7-201ENST00000416921 246 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC007435.1-201ENST00000421086 415 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AL691449.1-201ENST00000426570 421 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC023347.2-201ENST00000433994 462 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.74□□□□□ -1.81
SOX3P41225 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.74□□□□□ -1.81
SOX3P41225 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.74□□□□□ -1.81
SOX3P41225 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.74□□□□□ -1.81
SOX3P41225 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.74□□□□□ -1.81
SOX3P41225 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.74□□□□□ -1.81
SOX3P41225 AC010683.1-201ENST00000473673 378 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
SOX3P41225 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.74□□□□□ -1.81
SOX3P41225 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 AC010342.1-201ENST00000514047 877 ntBASIC3.74□□□□□ -1.81
SOX3P41225 RNU6-488P-201ENST00000515918 99 ntBASIC3.74□□□□□ -1.81
SOX3P41225 MIR2114-201ENST00000516645 80 ntBASIC3.74□□□□□ -1.81
SOX3P41225 RNU7-143P-201ENST00000516781 65 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.74□□□□□ -1.81
SOX3P41225 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.74□□□□□ -1.81
SOX3P41225 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.74□□□□□ -1.81
SOX3P41225 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 BNIP3P5-201ENST00000562290 498 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC009097.3-201ENST00000563557 1018 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.74□□□□□ -1.81
SOX3P41225 AC012417.1-201ENST00000582307 1039 ntBASIC3.74□□□□□ -1.81
SOX3P41225 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.74□□□□□ -1.81
SOX3P41225 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 AC069304.3-201ENST00000603938 1084 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AL139286.1-201ENST00000604465 483 ntBASIC3.74□□□□□ -1.81
SOX3P41225 MIR6868-201ENST00000611215 58 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC079395.3-201ENST00000615161 484 ntBASIC3.74□□□□□ -1.81
SOX3P41225 MIR6875-201ENST00000617506 72 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AC109809.1-201ENST00000619665 545 ntBASIC3.74□□□□□ -1.81
SOX3P41225 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
SOX3P41225 AC013470.4-201ENST00000619978 986 ntBASIC3.74□□□□□ -1.81
SOX3P41225 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX3P41225 AC114546.3-201ENST00000623582 1734 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AP000676.4-201ENST00000624659 623 ntBASIC3.74□□□□□ -1.81
SOX3P41225 AP005264.7-201ENST00000625003 745 ntBASIC3.74□□□□□ -1.81
SOX3P41225 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
SOX3P41225 BDP1P-201ENST00000582658 1990 ntBASIC3.74□□□□□ -1.81
SOX3P41225 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SOX3P41225 DBF4P1-201ENST00000412976 1892 ntBASIC3.73□□□□□ -1.81
SOX3P41225 LINC02471-203ENST00000641941 4752 ntBASIC3.73□□□□□ -1.81
SOX3P41225 XPOTP1-201ENST00000443317 2398 ntBASIC3.73□□□□□ -1.81
SOX3P41225 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
SOX3P41225 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SOX3P41225 SNORD116.1-201ENST00000365628 92 ntBASIC3.73□□□□□ -1.81
SOX3P41225 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.73□□□□□ -1.81
SOX3P41225 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.73□□□□□ -1.81
SOX3P41225 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
SOX3P41225 SNORD116-23-201ENST00000384645 92 ntBASIC3.73□□□□□ -1.81
SOX3P41225 SNORD65.1-201ENST00000390889 71 ntBASIC3.73□□□□□ -1.81
SOX3P41225 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.73□□□□□ -1.81
SOX3P41225 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.73□□□□□ -1.81
SOX3P41225 HMGB1P49-201ENST00000418882 569 ntBASIC3.73□□□□□ -1.81
SOX3P41225 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.73□□□□□ -1.81
SOX3P41225 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.73□□□□□ -1.81
SOX3P41225 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.73□□□□□ -1.81
SOX3P41225 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.73□□□□□ -1.81
SOX3P41225 USP9YP22-201ENST00000438971 294 ntBASIC3.73□□□□□ -1.81
SOX3P41225 COX6CP18-201ENST00000448769 222 ntBASIC3.73□□□□□ -1.81
SOX3P41225 Z99714.1-201ENST00000450463 807 ntBASIC3.73□□□□□ -1.81
SOX3P41225 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.73□□□□□ -1.81
SOX3P41225 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.73□□□□□ -1.81
SOX3P41225 VN1R40P-201ENST00000455196 941 ntBASIC3.73□□□□□ -1.81
SOX3P41225 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.73□□□□□ -1.81
SOX3P41225 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms