Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.81□□□□□ -1.8
BRCA1P38398 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
BRCA1P38398 AP003122.5-201ENST00000527668 3766 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC090971.4-201ENST00000560291 1800 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
BRCA1P38398 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.81□□□□□ -1.8
BRCA1P38398 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
BRCA1P38398 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.8□□□□□ -1.8
BRCA1P38398 RNU6-1251P-201ENST00000364502 107 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 SNORA70B-201ENST00000384210 135 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 AC126124.2-201ENST00000413542 321 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 AC022018.1-201ENST00000430685 241 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC3.8□□□□□ -1.8
BRCA1P38398 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.8□□□□□ -1.8
BRCA1P38398 RPS6P2-201ENST00000454208 705 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.8□□□□□ -1.8
BRCA1P38398 SYT14P1-201ENST00000481459 721 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.8□□□□□ -1.8
BRCA1P38398 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.8□□□□□ -1.8
BRCA1P38398 AC108120.2-201ENST00000512973 294 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 BRDTP1-201ENST00000605735 677 ntBASIC3.8□□□□□ -1.8
BRCA1P38398 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.8□□□□□ -1.8
BRCA1P38398 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
BRCA1P38398 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
BRCA1P38398 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.8□□□□□ -1.8
BRCA1P38398 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
BRCA1P38398 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.8□□□□□ -1.8
BRCA1P38398 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.8□□□□□ -1.8
BRCA1P38398 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
BRCA1P38398 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
BRCA1P38398 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.8□□□□□ -1.8
BRCA1P38398 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
BRCA1P38398 SNORA67.4-201ENST00000384688 142 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AL391417.1-201ENST00000404100 426 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.79□□□□□ -1.8
BRCA1P38398 FDX1P2-201ENST00000450769 375 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.79□□□□□ -1.8
BRCA1P38398 RPL23AP73-201ENST00000492507 471 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AC147055.1-201ENST00000509261 750 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AC015917.1-201ENST00000579654 510 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 BMS1P7-201ENST00000602440 1052 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 AC099506.2-201ENST00000623074 221 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
BRCA1P38398 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
BRCA1P38398 AC092079.1-201ENST00000558620 1985 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.79□□□□□ -1.8
BRCA1P38398 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 DDX18P3-201ENST00000404856 2007 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
BRCA1P38398 RNU6-532P-201ENST00000384318 107 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 SNORD65-201ENST00000391079 73 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 Z98941.1-201ENST00000407764 100 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 TRGV6-201ENST00000417928 299 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 TOMM20P4-201ENST00000427861 435 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AC073508.1-201ENST00000428866 656 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 MTCYBP12-201ENST00000440559 1134 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AC112653.1-201ENST00000443851 386 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
BRCA1P38398 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
BRCA1P38398 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.79□□□□□ -1.8
BRCA1P38398 AC015871.2-201ENST00000603605 948 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.79□□□□□ -1.8
BRCA1P38398 AC116447.1-201ENST00000613153 453 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AL158196.1-201ENST00000616786 434 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 AC103858.2-201ENST00000621471 543 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 LINC02471-203ENST00000641941 4752 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 SCN1A-220ENST00000641603 12506 ntBASIC3.79□□□□□ -1.8
BRCA1P38398 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
BRCA1P38398 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
BRCA1P38398 AL445437.1-201ENST00000623157 3087 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.78□□□□□ -1.8
BRCA1P38398 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.78□□□□□ -1.8
BRCA1P38398 ETF1P3-201ENST00000430422 1160 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 ARL5AP4-201ENST00000430731 512 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 MTCO3P21-201ENST00000430791 643 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.78□□□□□ -1.8
BRCA1P38398 VN1R48P-201ENST00000448149 1036 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 AL513124.1-201ENST00000450410 614 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 CLIC4P1-201ENST00000453177 535 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.78□□□□□ -1.8
BRCA1P38398 AC069499.1-201ENST00000489433 509 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.78□□□□□ -1.8
BRCA1P38398 AC117525.1-201ENST00000515228 503 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.78□□□□□ -1.8
BRCA1P38398 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.78□□□□□ -1.8
BRCA1P38398 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.78□□□□□ -1.8
BRCA1P38398 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC3.78□□□□□ -1.8
BRCA1P38398 MIR4524B-201ENST00000581569 115 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 AC112503.1-201ENST00000608436 391 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 AC092159.4-201ENST00000624944 550 ntBASIC3.78□□□□□ -1.8
BRCA1P38398 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
BRCA1P38398 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
BRCA1P38398 ASNSP1-201ENST00000518311 1939 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms