Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HOXD4P09016 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 MIR449B-201ENST00000384995 97 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 Y_RNA.578-201ENST00000390903 88 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 SNORA11.1-201ENST00000408133 129 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 HSPE1P12-201ENST00000412576 301 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 BTF3P8-201ENST00000414577 526 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 VPS26BP1-201ENST00000417155 755 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD4P09016 AL031736.2-201ENST00000426573 787 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC092634.2-201ENST00000428146 1010 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 RPL23AP89-201ENST00000439324 255 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC092170.1-201ENST00000440211 356 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC006011.1-201ENST00000442758 349 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 VN1R25P-201ENST00000443385 738 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AL591719.1-201ENST00000444669 744 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD4P09016 ZNF886P-201ENST00000450781 723 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 ANP32BP2-201ENST00000454525 545 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 RNU7-140P-201ENST00000459546 60 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 RN7SL585P-201ENST00000470538 280 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC069499.1-201ENST00000489433 509 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 RPL29P14-201ENST00000495837 428 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD4P09016 AC119751.1-201ENST00000513357 765 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC083923.1-201ENST00000523708 376 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD4P09016 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD4P09016 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXD4P09016 AC091516.1-201ENST00000549191 703 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 AC027104.1-201ENST00000563702 681 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXD4P09016 AC112230.1-201ENST00000604342 547 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 Z99289.3-201ENST00000605586 594 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 AC009464.1-201ENST00000615731 469 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 MIR7151-201ENST00000617477 60 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 STMN1P1-201ENST00000617809 440 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 AL121594.5-201ENST00000631724 573 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 U6.107-201ENST00000637108 79 ntBASIC3.67□□□□□ -1.82
HOXD4P09016 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD4P09016 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD4P09016 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
HOXD4P09016 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD4P09016 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.67□□□□□ -1.82
HOXD4P09016 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD4P09016 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD4P09016 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD4P09016 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD4P09016 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD4P09016 SEC63P2-201ENST00000503863 1939 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD4P09016 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD4P09016 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD4P09016 SNORA71.3-201ENST00000362582 128 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 RNU6-353P-201ENST00000364266 108 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXD4P09016 RPS7P9-201ENST00000414704 586 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 TAF13P2-201ENST00000416876 286 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 C1DP1-201ENST00000426049 402 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD4P09016 RPL37P1-201ENST00000432310 284 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
HOXD4P09016 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 MTND1P31-201ENST00000449206 961 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 PTGES3P5-201ENST00000455109 434 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AL136097.1-201ENST00000456945 913 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 AC011037.1-201ENST00000483964 558 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC079203.1-201ENST00000487972 404 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 RPL7P47-201ENST00000497299 556 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 MTCYBP35-201ENST00000503630 1137 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD4P09016 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD4P09016 HMGB1P1-201ENST00000522557 636 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD4P09016 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD4P09016 OR4U1P-201ENST00000554958 912 ntBASIC3.66□□□□□ -1.82
HOXD4P09016 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD4P09016 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD4P09016 MTND3P12-201ENST00000559068 328 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms