Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SNRNP40Q96DI7 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SNRNP40Q96DI7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SNRNP40Q96DI7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.33■□□□□ 0.37
SNRNP40Q96DI7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.33■□□□□ 0.37
SNRNP40Q96DI7 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SNRNP40Q96DI7 KRT8P11-201ENST00000409686 1436 ntBASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNRNP40Q96DI7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNRNP40Q96DI7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 SPDYE15P-201ENST00000424157 909 ntBASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.31■□□□□ 0.36
SNRNP40Q96DI7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNRNP40Q96DI7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms