Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC023825.1-201ENST00000566704 1030 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 TMF1P1-201ENST00000576058 373 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC008507.2-201ENST00000588402 1176 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC006116.7-201ENST00000590141 756 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 SGO1P1-201ENST00000603525 1447 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AP003476.1-201ENST00000623984 516 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC034229.5-201ENST00000624258 185 ntBASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.74□□□□□ -1.81
LHX3Q9UBR4 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 SNORA5A-201ENST00000384111 134 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC092638.1-201ENST00000411966 1275 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AL035423.1-201ENST00000420331 213 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 RPL36P19-201ENST00000430744 301 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC010881.1-201ENST00000433830 235 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 RPS26P56-201ENST00000444468 240 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 Z95327.1-201ENST00000446082 482 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 RPL21P71-201ENST00000465598 459 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC012170.1-201ENST00000495139 359 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 RNU1-95P-201ENST00000516357 160 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 SNORA67.7-201ENST00000516664 135 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 RNU1-128P-201ENST00000516704 160 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 RN7SKP209-201ENST00000516888 304 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC022069.1-201ENST00000582910 658 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 MIR3158-1-201ENST00000583596 81 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AL020997.3-201ENST00000602843 359 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AL163642.2-201ENST00000604722 1019 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC005014.3-201ENST00000605985 190 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 VN1R74P-201ENST00000613259 503 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC005156.1-201ENST00000613371 573 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC103858.2-201ENST00000621471 543 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 AC139713.2-210ENST00000641741 992 ntBASIC3.73□□□□□ -1.81
LHX3Q9UBR4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
LHX3Q9UBR4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 RNU6-1243P-201ENST00000364028 107 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 HMGN2P8-201ENST00000391458 268 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 SYF2P2-201ENST00000417620 583 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 HMGB3P20-201ENST00000417997 600 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC008280.1-201ENST00000418851 412 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 RPL21P109-201ENST00000422213 475 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 PSMA2P3-201ENST00000429685 675 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AF228730.2-201ENST00000438784 848 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 Z77249.1-201ENST00000444622 1175 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 PPIAP3-201ENST00000450588 505 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 SNORD108-201ENST00000459332 71 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 PRELID3BP7-201ENST00000503606 469 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC026414.1-201ENST00000504046 698 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC118282.2-201ENST00000508739 374 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 OR8L1P-201ENST00000534005 955 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC092747.2-201ENST00000545069 983 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 MTCYBP28-201ENST00000566728 1132 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC090666.1-201ENST00000578241 445 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 MIR1254-2-201ENST00000579553 63 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 VN1R87P-201ENST00000596706 487 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC083899.3-201ENST00000603413 594 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms