Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AP005264.7-201ENST00000625003 745 ntBASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.41□□□□□ -1.54
CHMP4AQ9BY43 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 FAM3C2-201ENST00000312214 681 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 SNORA60-201ENST00000362396 134 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 U1.1-201ENST00000384101 164 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 RPS23P10-201ENST00000416185 486 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 PTP4A1P7-201ENST00000423476 514 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 DPRXP1-201ENST00000426312 460 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AL035410.1-201ENST00000427409 427 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 HMGB3P5-201ENST00000428894 612 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AL662791.1-201ENST00000441992 928 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 EXTL2P1-201ENST00000446218 416 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 RAD23BP3-201ENST00000454157 1152 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC005008.1-201ENST00000456151 612 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 RNU7-170P-201ENST00000459303 61 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC093801.2-201ENST00000503966 1050 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC018630.1-201ENST00000541376 925 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC008127.2-201ENST00000549925 1075 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC006116.7-201ENST00000590141 756 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 RPL23AP92-201ENST00000603609 255 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC010738.1-201ENST00000604970 987 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC055876.5-201ENST00000605667 259 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AL157770.1-201ENST00000623049 439 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 AC008013.2-202ENST00000637965 364 ntBASIC5.4□□□□□ -1.54
CHMP4AQ9BY43 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CHMP4AQ9BY43 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CHMP4AQ9BY43 AC111188.2-201ENST00000529697 1387 ntBASIC5.4□□□□□ -1.55
CHMP4AQ9BY43 AL672167.1-203ENST00000641299 2975 ntBASIC5.4□□□□□ -1.55
CHMP4AQ9BY43 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
CHMP4AQ9BY43 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 SUGT1P1-201ENST00000379514 476 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 SNORA51.6-201ENST00000384151 125 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 MIR217-201ENST00000384817 110 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 RN7SKP33-201ENST00000410942 340 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 OR1AA1P-201ENST00000419597 916 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 HMGN2P20-201ENST00000437531 273 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 HSFY6P-201ENST00000445573 403 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 MTND2P19-201ENST00000449129 1012 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 RPL36AP13-201ENST00000457490 317 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 RPL7P9-201ENST00000468715 747 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 DEFB109F-201ENST00000491870 277 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC063950.1-201ENST00000552036 308 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC044913.1-201ENST00000557200 430 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC007224.1-201ENST00000564410 144 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC107982.3-201ENST00000584957 985 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC090330.1-201ENST00000588646 764 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AC112484.5-201ENST00000624189 228 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AP003485.1-201ENST00000625093 753 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 AL353746.1-201ENST00000566293 6881 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC5.39□□□□□ -1.55
CHMP4AQ9BY43 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 SNORD82-201ENST00000365530 70 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 RNU6-629P-201ENST00000384061 103 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 MIR506-201ENST00000384998 124 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 HDGFP1-201ENST00000405943 252 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 Z93242.1-201ENST00000427102 353 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 MTCO1P54-201ENST00000430139 712 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 KCTD10P1-201ENST00000434203 625 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms