Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC048346.1-201ENST00000510247 144 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC006499.6-201ENST00000511169 607 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RPL7L1P13-201ENST00000511702 739 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RNU6-311P-201ENST00000516224 102 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 IGLV3-26-201ENST00000520756 302 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC022790.1-201ENST00000522872 204 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC092747.2-201ENST00000545069 983 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RPL23AP87-202ENST00000573039 466 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC112230.1-201ENST00000604342 547 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 MIR6868-201ENST00000611215 58 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AL359535.1-201ENST00000612100 1087 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC090246.1-201ENST00000616499 426 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AL354798.1-201ENST00000622505 329 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 OR11H5P-202ENST00000641612 1325 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 MTND4P8-201ENST00000514997 1362 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 RNU6-906P-201ENST00000384700 70 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 GSTA8P-201ENST00000404253 637 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 OR4K6P-201ENST00000416478 897 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AL356320.2-201ENST00000417263 507 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC008280.1-201ENST00000418851 412 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 EIF4EP1-201ENST00000422311 642 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 RAC1P8-201ENST00000427086 527 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC006946.1-201ENST00000429106 328 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 MTCO1P3-201ENST00000429327 192 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 B3GNT2P1-201ENST00000434960 952 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 RPS26P56-201ENST00000444468 240 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AL133547.1-201ENST00000448546 220 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AL500522.2-201ENST00000448562 343 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 Z99714.1-201ENST00000450463 807 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AL121877.1-201ENST00000453704 622 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 CYP4A43P-201ENST00000568156 121 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC025627.2-201ENST00000576220 160 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 MIR5708-201ENST00000579723 85 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AL445435.1-201ENST00000604232 665 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC021749.1-201ENST00000604322 607 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AL139286.1-201ENST00000604465 483 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AP003973.1-201ENST00000604639 691 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC069545.1-201ENST00000605671 358 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AL356121.2-201ENST00000624715 780 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AP005264.7-201ENST00000625003 745 ntBASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC3Q9BQI4 KPNA2P2-201ENST00000419546 1489 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 PNPT1P2-201ENST00000456768 2050 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 RNA5SP502-201ENST00000362694 119 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 Y_RNA.472-201ENST00000384322 102 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 LAP3P1-201ENST00000403648 294 ntBASIC3.92□□□□□ -1.78
CCDC3Q9BQI4 AL139098.1-201ENST00000407291 389 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms