Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RAB28P1-201ENST00000411517 641 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AL136133.1-201ENST00000413694 376 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 RPS23P10-201ENST00000416185 486 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AIMP1P1-201ENST00000418670 937 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 MRPL50P1-201ENST00000431951 384 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AL590103.1-201ENST00000434488 307 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AL365440.1-201ENST00000436135 2167 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 MTCYBP31-201ENST00000438855 1122 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VMP1Q96GC9 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC004062.1-201ENST00000509926 645 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VMP1Q96GC9 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 XIAPP1-201ENST00000603162 600 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AL592436.1-201ENST00000605135 558 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC006338.2-201ENST00000616864 791 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC092650.2-201ENST00000619984 902 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 MIR6758-201ENST00000620653 63 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 PLCE1P1-201ENST00000622094 305 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC005183.1-201ENST00000603687 1979 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VMP1Q96GC9 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC126755.2-208ENST00000327792 462 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC138969.1-213ENST00000331436 462 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 RPL32P3-201ENST00000359025 275 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 RNU6-50P-201ENST00000362356 103 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 RPL7P27-201ENST00000403775 720 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC027644.1-201ENST00000419595 298 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 CHIAP3-201ENST00000423668 1133 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 NIPA2P1-201ENST00000426223 976 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 RPS3AP54-201ENST00000435535 734 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 HMGB1P16-201ENST00000447155 540 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC109327.1-201ENST00000471666 403 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC026979.1-201ENST00000492525 396 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 DYNLL1P6-201ENST00000503440 264 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC093767.1-201ENST00000504523 156 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC017037.1-201ENST00000508460 471 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 SULT1C2P1-202ENST00000562418 459 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC023825.1-201ENST00000566704 1030 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC012603.1-201ENST00000606424 528 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AL445423.1-201ENST00000609941 536 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC011944.2-201ENST00000624440 683 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 AC026634.1-201ENST00000634369 198 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
VMP1Q96GC9 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VMP1Q96GC9 AL672296.1-201ENST00000427780 2158 ntBASIC4.07□□□□□ -1.76
VMP1Q96GC9 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.07□□□□□ -1.76
VMP1Q96GC9 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.06□□□□□ -1.76
VMP1Q96GC9 MTND4P34-201ENST00000572715 1371 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VMP1Q96GC9 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
VMP1Q96GC9 HMGB1P5-201ENST00000255320 642 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 RNU6-1066P-201ENST00000363573 105 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 RNA5SP322-201ENST00000363617 119 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VMP1Q96GC9 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.06□□□□□ -1.76
VMP1Q96GC9 MIR217-201ENST00000384817 110 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 AC009237.5-201ENST00000414271 501 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 RPL21P109-201ENST00000422213 475 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 SDCBPP2-201ENST00000424643 885 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.06□□□□□ -1.76
VMP1Q96GC9 Z93242.1-201ENST00000427102 353 ntBASIC4.06□□□□□ -1.76
VMP1Q96GC9 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.06□□□□□ -1.76
VMP1Q96GC9 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.06□□□□□ -1.76
VMP1Q96GC9 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.06□□□□□ -1.76
VMP1Q96GC9 MRPL42P4-201ENST00000453267 443 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms