Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 RN7SKP162-201ENST00000363605 345 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 SNORA67.1-201ENST00000364749 141 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 OR6K3-202ENST00000368146 996 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 UQCRFS1P3-201ENST00000407697 385 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 RN7SKP222-201ENST00000410651 315 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC092447.6-201ENST00000414578 210 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC080125.1-201ENST00000414888 684 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC006065.1-201ENST00000422539 802 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 RPS27AP7-201ENST00000422792 455 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 EIF2S2P3-201ENST00000428356 999 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 PTP4A1P3-201ENST00000433661 420 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 CEACAMP11-201ENST00000455211 583 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 PLGLA-201ENST00000465668 449 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 RPS29P2-201ENST00000479278 136 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC041039.1-201ENST00000485656 536 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 SRIP1-201ENST00000489235 288 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 SCARNA14-201ENST00000516903 136 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AP000790.1-201ENST00000528891 737 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 OR6C73P-201ENST00000546432 358 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 OR7K1P-201ENST00000546439 926 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC005476.1-201ENST00000554427 397 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 NBEAP1-201ENST00000554452 979 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 MIR6883-201ENST00000614952 78 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC099506.2-201ENST00000623074 221 ntBASIC1.82□□□□□ -2.12
LINC00643Q86TS7 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 PABPC1P7-201ENST00000413177 1513 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AL080312.1-201ENST00000256654 824 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 U8.4-201ENST00000363626 134 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 RN7SKP171-201ENST00000364417 303 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AL591034.1-201ENST00000407447 340 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AP000534.2-201ENST00000412729 568 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 MORF4L1P6-201ENST00000418771 268 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 VN1R3-201ENST00000418822 919 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 RPL23AP38-201ENST00000423801 469 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 RPL21P110-201ENST00000433345 446 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AL162389.1-201ENST00000449233 177 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 ELOCP23-201ENST00000452014 332 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 RPL23AP24-201ENST00000458203 385 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC017015.1-201ENST00000477387 286 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC004453.1-201ENST00000487895 408 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC090543.1-201ENST00000492168 485 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 CDC42P4-201ENST00000510507 563 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 HMGB3P3-201ENST00000510526 400 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC107222.1-201ENST00000510899 637 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC008716.1-201ENST00000511084 513 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 IGLV3-17-201ENST00000519099 244 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC087808.1-201ENST00000520501 361 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 NOP56P3-201ENST00000549457 385 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC007336.1-201ENST00000576365 3828 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 MIR5694-201ENST00000581190 76 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC020895.1-201ENST00000595362 272 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AL161912.3-201ENST00000605404 628 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 HMGN2P28-201ENST00000606102 262 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AC006329.2-201ENST00000611491 394 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 AL137847.3-201ENST00000611521 109 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 MIR6807-201ENST00000621968 92 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 CR381653.2-201ENST00000624041 768 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.81□□□□□ -2.12
LINC00643Q86TS7 HSPA8P19-201ENST00000505359 1517 ntBASIC1.81□□□□□ -2.12
LINC00643Q86TS7 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms