Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
COL18A1P39060 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL18A1P39060 AL049780.3-201ENST00000624612 1583 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL18A1P39060 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL18A1P39060 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.88□□□□□ -1.79
COL18A1P39060 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL18A1P39060 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.88□□□□□ -1.79
COL18A1P39060 AC010401.1-201ENST00000463867 348 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 RPL31P13-201ENST00000484151 370 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 AC112184.1-201ENST00000505179 312 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 AC234778.2-201ENST00000566241 354 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 AC138761.3-201ENST00000579993 334 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 MIR4435-1-201ENST00000582552 80 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 AC087241.4-201ENST00000612441 480 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL18A1P39060 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.88□□□□□ -1.79
COL18A1P39060 MAPK10-362ENST00000641864 4484 ntBASIC3.88□□□□□ -1.79
COL18A1P39060 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL18A1P39060 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.87□□□□□ -1.79
COL18A1P39060 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL18A1P39060 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC3.87□□□□□ -1.79
COL18A1P39060 RNU6-233P-201ENST00000410845 141 ntBASIC3.87□□□□□ -1.79
COL18A1P39060 RNU2-22P-201ENST00000411266 212 ntBASIC3.87□□□□□ -1.79
COL18A1P39060 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.87□□□□□ -1.79
COL18A1P39060 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL18A1P39060 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.87□□□□□ -1.79
COL18A1P39060 AC124856.1-201ENST00000600819 896 ntBASIC3.87□□□□□ -1.79
COL18A1P39060 AC096947.1-201ENST00000603233 470 ntBASIC3.87□□□□□ -1.79
COL18A1P39060 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL18A1P39060 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL18A1P39060 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.87□□□□□ -1.79
COL18A1P39060 MTND4P26-201ENST00000415971 1359 ntBASIC3.87□□□□□ -1.79
COL18A1P39060 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL18A1P39060 AL445213.1-201ENST00000412589 747 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 AC063976.3-201ENST00000426849 329 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC3.86□□□□□ -1.79
COL18A1P39060 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.86□□□□□ -1.79
COL18A1P39060 AC091544.1-201ENST00000484702 348 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.86□□□□□ -1.79
COL18A1P39060 AC011602.1-201ENST00000546484 331 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 MIR4425-201ENST00000580572 84 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.86□□□□□ -1.79
COL18A1P39060 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL18A1P39060 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.86□□□□□ -1.79
COL18A1P39060 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL18A1P39060 AL022311.1-201ENST00000623726 19416 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL18A1P39060 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.86□□□□□ -1.79
COL18A1P39060 AC009263.1-201ENST00000441193 1239 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 RPS17P11-201ENST00000474297 293 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 AC114781.4-201ENST00000513707 639 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 RN7SKP272-201ENST00000516988 232 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 AL592494.2-201ENST00000425455 1548 ntBASIC3.86□□□□□ -1.79
COL18A1P39060 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.85□□□□□ -1.79
COL18A1P39060 MTND5P24-201ENST00000438892 1767 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL18A1P39060 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.85□□□□□ -1.79
COL18A1P39060 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.85□□□□□ -1.79
COL18A1P39060 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
COL18A1P39060 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL18A1P39060 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.85□□□□□ -1.79
COL18A1P39060 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL18A1P39060 RNA5SP21-201ENST00000410917 96 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 RNU7-157P-201ENST00000459600 66 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 AC108078.3-201ENST00000502633 489 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 OR5H3P-201ENST00000502817 919 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 AC106734.1-201ENST00000568646 663 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 AP004607.9-201ENST00000618202 316 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 AC093909.5-201ENST00000621839 1799 ntBASIC3.85□□□□□ -1.79
COL18A1P39060 AL672167.1-206ENST00000356293 943 ntBASIC3.84□□□□□ -1.79
COL18A1P39060 RSL24D1P4-201ENST00000400938 484 ntBASIC3.84□□□□□ -1.79
COL18A1P39060 MRPL50P2-201ENST00000416821 482 ntBASIC3.84□□□□□ -1.79
COL18A1P39060 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.84□□□□□ -1.79
COL18A1P39060 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.84□□□□□ -1.79
COL18A1P39060 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.84□□□□□ -1.79
COL18A1P39060 AC017037.2-201ENST00000513850 890 ntBASIC3.84□□□□□ -1.79
COL18A1P39060 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.84□□□□□ -1.79
COL18A1P39060 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.84□□□□□ -1.79
COL18A1P39060 SETP1-201ENST00000556014 845 ntBASIC3.84□□□□□ -1.79
COL18A1P39060 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.84□□□□□ -1.79
COL18A1P39060 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
COL18A1P39060 AP006437.1-201ENST00000641440 3685 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
COL18A1P39060 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.84□□□□□ -1.8
COL18A1P39060 AL162389.1-201ENST00000449233 177 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 AL513124.1-201ENST00000450410 614 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 TRBV12-1-201ENST00000479785 344 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
COL18A1P39060 AC009097.3-201ENST00000563557 1018 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 AC233280.2-201ENST00000603917 1070 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 OR6R2P-201ENST00000609216 300 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 AL590808.1-201ENST00000618696 141 ntBASIC3.84□□□□□ -1.8
COL18A1P39060 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.8
COL18A1P39060 CDC27P2-201ENST00000425026 1922 ntBASIC3.83□□□□□ -1.8
COL18A1P39060 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL18A1P39060 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
COL18A1P39060 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL18A1P39060 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms