Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX1P28360 AC114491.1-201ENST00000416095 246 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AL139095.3-201ENST00000419672 1203 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AC099782.1-201ENST00000425889 474 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.92□□□□□ -1.46
MSX1P28360 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX1P28360 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX1P28360 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.92□□□□□ -1.46
MSX1P28360 HMGB3P21-201ENST00000452483 547 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 PLGLA-201ENST00000465668 449 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AC005726.1-201ENST00000494679 427 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AC022206.1-201ENST00000495947 347 ntBASIC5.92□□□□□ -1.46
MSX1P28360 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX1P28360 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSX1P28360 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX1P28360 AC022616.4-201ENST00000522985 181 ntBASIC5.92□□□□□ -1.46
MSX1P28360 IGHV1-14-201ENST00000523391 241 ntBASIC5.92□□□□□ -1.46
MSX1P28360 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.92□□□□□ -1.46
MSX1P28360 AC006512.2-201ENST00000543250 486 ntBASIC5.92□□□□□ -1.46
MSX1P28360 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSX1P28360 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX1P28360 HMGN2P47-201ENST00000559378 272 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX1P28360 uc_338.31-201ENST00000615595 186 ntBASIC5.92□□□□□ -1.46
MSX1P28360 AL353662.3-201ENST00000625131 237 ntBASIC5.92□□□□□ -1.46
MSX1P28360 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSX1P28360 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 CTNNA1P1-201ENST00000515849 2728 ntBASIC5.92□□□□□ -1.46
MSX1P28360 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 AC235565.1-201ENST00000456962 1325 ntBASIC5.92□□□□□ -1.46
MSX1P28360 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX1P28360 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
MSX1P28360 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
MSX1P28360 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX1P28360 AL731556.1-201ENST00000394628 3711 ntBASIC5.91□□□□□ -1.46
MSX1P28360 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 AC083837.1-201ENST00000565297 2994 ntBASIC5.91□□□□□ -1.46
MSX1P28360 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
MSX1P28360 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX1P28360 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
MSX1P28360 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 Y_RNA.210-201ENST00000364161 110 ntBASIC5.91□□□□□ -1.46
MSX1P28360 RNA5SP485-201ENST00000365053 119 ntBASIC5.91□□□□□ -1.46
MSX1P28360 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 Y_RNA.485-201ENST00000384395 102 ntBASIC5.91□□□□□ -1.46
MSX1P28360 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX1P28360 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX1P28360 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 RPS7P3-201ENST00000443360 580 ntBASIC5.91□□□□□ -1.46
MSX1P28360 OR1H1P-201ENST00000448731 937 ntBASIC5.91□□□□□ -1.46
MSX1P28360 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 SNORD127-201ENST00000458892 86 ntBASIC5.91□□□□□ -1.46
MSX1P28360 RNU7-59P-201ENST00000459101 61 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AC116533.1-201ENST00000459748 321 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AC006967.1-201ENST00000467608 589 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 AC106800.3-201ENST00000511389 308 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AC021146.3-201ENST00000511911 260 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX1P28360 HSD3BP3-201ENST00000514706 994 ntBASIC5.91□□□□□ -1.46
MSX1P28360 RNU4-77P-201ENST00000516692 156 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX1P28360 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 AC078899.3-201ENST00000599065 212 ntBASIC5.91□□□□□ -1.46
MSX1P28360 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX1P28360 AC020910.3-201ENST00000603701 874 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AL031320.1-201ENST00000604177 357 ntBASIC5.91□□□□□ -1.46
MSX1P28360 AC104695.2-201ENST00000605056 775 ntBASIC5.91□□□□□ -1.46
MSX1P28360 SNORA74.4-201ENST00000607595 199 ntBASIC5.91□□□□□ -1.46
MSX1P28360 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX1P28360 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX1P28360 MTCO1P24-201ENST00000515438 1558 ntBASIC5.91□□□□□ -1.46
MSX1P28360 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 AC007159.1-201ENST00000566529 4706 ntBASIC5.91□□□□□ -1.46
MSX1P28360 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX1P28360 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms