Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 MTND2P3-201ENST00000452458 470 ntBASIC3.18□□□□□ -1.9
USF1P22415 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.18□□□□□ -1.9
USF1P22415 MRPL35P4-201ENST00000453682 566 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC078785.3-201ENST00000476607 425 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC092451.1-201ENST00000480211 153 ntBASIC3.18□□□□□ -1.9
USF1P22415 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.18□□□□□ -1.9
USF1P22415 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.18□□□□□ -1.9
USF1P22415 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.18□□□□□ -1.9
USF1P22415 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 AC093755.1-201ENST00000512950 1023 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 SNORA70.24-201ENST00000517233 118 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 AC026616.1-201ENST00000523157 525 ntBASIC3.18□□□□□ -1.9
USF1P22415 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.18□□□□□ -1.9
USF1P22415 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 SERPINE4P-201ENST00000554978 281 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.18□□□□□ -1.9
USF1P22415 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 FRG1DP-201ENST00000635586 771 ntBASIC3.18□□□□□ -1.9
USF1P22415 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.18□□□□□ -1.9
USF1P22415 MTND5P11-201ENST00000511037 1812 ntBASIC3.18□□□□□ -1.9
USF1P22415 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 AC073346.2-201ENST00000624724 2058 ntBASIC3.18□□□□□ -1.9
USF1P22415 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.18□□□□□ -1.9
USF1P22415 AC046144.1-201ENST00000478559 1853 ntBASIC3.18□□□□□ -1.9
USF1P22415 AC104446.1-201ENST00000613728 1321 ntBASIC3.18□□□□□ -1.9
USF1P22415 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USF1P22415 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 AF127577.6-201ENST00000623352 2191 ntBASIC3.17□□□□□ -1.9
USF1P22415 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
USF1P22415 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
USF1P22415 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.17□□□□□ -1.9
USF1P22415 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 SNORA51.12-201ENST00000384448 134 ntBASIC3.17□□□□□ -1.9
USF1P22415 RPS20P25-201ENST00000412447 352 ntBASIC3.17□□□□□ -1.9
USF1P22415 HMGB3P31-201ENST00000413333 595 ntBASIC3.17□□□□□ -1.9
USF1P22415 AC241520.1-201ENST00000422654 1099 ntBASIC3.17□□□□□ -1.9
USF1P22415 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.17□□□□□ -1.9
USF1P22415 AC005189.1-201ENST00000431286 310 ntBASIC3.17□□□□□ -1.9
USF1P22415 AL691517.1-201ENST00000440833 1235 ntBASIC3.17□□□□□ -1.9
USF1P22415 RPS3AP46-201ENST00000448352 682 ntBASIC3.17□□□□□ -1.9
USF1P22415 CYCSP35-201ENST00000451978 304 ntBASIC3.17□□□□□ -1.9
USF1P22415 DNAJC19P1-201ENST00000455312 319 ntBASIC3.17□□□□□ -1.9
USF1P22415 RPS20P32-201ENST00000456044 356 ntBASIC3.17□□□□□ -1.9
USF1P22415 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.17□□□□□ -1.9
USF1P22415 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.17□□□□□ -1.9
USF1P22415 NPM1P17-201ENST00000479221 602 ntBASIC3.17□□□□□ -1.9
USF1P22415 AL049830.2-201ENST00000480072 201 ntBASIC3.17□□□□□ -1.9
USF1P22415 AC073522.1-201ENST00000483312 377 ntBASIC3.17□□□□□ -1.9
USF1P22415 RPL7P24-201ENST00000493052 752 ntBASIC3.17□□□□□ -1.9
USF1P22415 CAB39P1-201ENST00000502277 460 ntBASIC3.17□□□□□ -1.9
USF1P22415 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.17□□□□□ -1.9
USF1P22415 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 HMGN1P15-201ENST00000513870 295 ntBASIC3.17□□□□□ -1.9
USF1P22415 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.17□□□□□ -1.9
USF1P22415 AC083923.1-201ENST00000523708 376 ntBASIC3.17□□□□□ -1.9
USF1P22415 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.17□□□□□ -1.9
USF1P22415 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.17□□□□□ -1.9
USF1P22415 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.17□□□□□ -1.9
USF1P22415 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.17□□□□□ -1.9
USF1P22415 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.17□□□□□ -1.9
USF1P22415 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.17□□□□□ -1.9
USF1P22415 AC040174.2-201ENST00000602701 465 ntBASIC3.17□□□□□ -1.9
USF1P22415 ELOCP35-201ENST00000604289 336 ntBASIC3.17□□□□□ -1.9
USF1P22415 Z82195.1-201ENST00000604558 398 ntBASIC3.17□□□□□ -1.9
USF1P22415 AC012467.1-201ENST00000607740 256 ntBASIC3.17□□□□□ -1.9
USF1P22415 AC091953.5-201ENST00000622919 233 ntBASIC3.17□□□□□ -1.9
USF1P22415 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.17□□□□□ -1.9
USF1P22415 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
USF1P22415 MTCO1P18-201ENST00000455518 1419 ntBASIC3.17□□□□□ -1.9
USF1P22415 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.17□□□□□ -1.9
USF1P22415 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USF1P22415 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.17□□□□□ -1.9
USF1P22415 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 GABPAP-201ENST00000419271 1356 ntBASIC3.16□□□□□ -1.9
USF1P22415 MTND5P1-201ENST00000445440 1375 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms