Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL6A1P12109 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
COL6A1P12109 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
COL6A1P12109 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 OR56B2P-202ENST00000641377 2453 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL6A1P12109 RNU1-85P-201ENST00000364127 164 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 RNU4-12P-201ENST00000365233 139 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 RNA5SP88-201ENST00000365560 109 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 Y_RNA.554-201ENST00000384672 102 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 MIR134-201ENST00000385258 73 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 MIR1284-201ENST00000408337 120 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC114755.2-201ENST00000413520 361 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 AL365184.2-201ENST00000431139 435 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 RPL19P16-201ENST00000433839 588 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC105402.2-201ENST00000438503 358 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC5.47□□□□□ -1.53
COL6A1P12109 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 VN1R10P-201ENST00000447106 875 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC5.47□□□□□ -1.53
COL6A1P12109 RPL7P31-201ENST00000450192 724 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC098824.1-201ENST00000453565 980 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 RPL30P9-201ENST00000465586 330 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AL121769.1-201ENST00000469473 401 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC109327.1-201ENST00000471666 403 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 AC023424.2-201ENST00000493479 777 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 FTH1P24-201ENST00000503502 462 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC5.47□□□□□ -1.53
COL6A1P12109 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.47□□□□□ -1.53
COL6A1P12109 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.47□□□□□ -1.53
COL6A1P12109 AC093840.1-201ENST00000511599 336 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC098976.1-201ENST00000513014 541 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.47□□□□□ -1.53
COL6A1P12109 AP001189.2-201ENST00000527320 189 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC5.47□□□□□ -1.53
COL6A1P12109 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.47□□□□□ -1.53
COL6A1P12109 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC5.47□□□□□ -1.53
COL6A1P12109 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 MIR548AB-201ENST00000584917 84 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC093227.2-201ENST00000589357 285 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.47□□□□□ -1.53
COL6A1P12109 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 RNA5SP439-201ENST00000617595 124 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 AL157786.1-207ENST00000627771 695 ntBASIC5.47□□□□□ -1.53
COL6A1P12109 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
COL6A1P12109 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.47□□□□□ -1.53
COL6A1P12109 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
COL6A1P12109 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A1P12109 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL6A1P12109 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.46□□□□□ -1.53
COL6A1P12109 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.46□□□□□ -1.54
COL6A1P12109 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL6A1P12109 RNU6-839P-201ENST00000363347 108 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL6A1P12109 MIR217-201ENST00000384817 110 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 SNORD115-47-201ENST00000391226 86 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 U3.30-201ENST00000391308 210 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 FABP7P1-201ENST00000424004 391 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A1P12109 Z93242.1-201ENST00000427102 353 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.46□□□□□ -1.54
COL6A1P12109 AC114755.5-201ENST00000447760 831 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.46□□□□□ -1.54
COL6A1P12109 COX6CP18-201ENST00000448769 222 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 PDSS1P2-201ENST00000449397 678 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC104306.1-201ENST00000449702 371 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.46□□□□□ -1.54
COL6A1P12109 SNRPFP4-201ENST00000456366 242 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 KLF3P2-201ENST00000465138 268 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 RN7SL441P-201ENST00000492388 296 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 RPL9P6-201ENST00000492764 598 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 AL035404.1-201ENST00000497982 568 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC117522.1-201ENST00000509821 380 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms