Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPL23AP16-201ENST00000441715 421 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 RN7SL385P-201ENST00000468873 276 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC104763.1-201ENST00000475274 360 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC107401.1-201ENST00000503426 685 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 RNU6-709P-201ENST00000517257 104 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC009643.1-201ENST00000532030 391 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 LARP7P2-201ENST00000575306 125 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 MIR4715-201ENST00000584117 79 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AP000403.1-201ENST00000603349 851 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC005191.1-201ENST00000603950 358 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AC103710.4-201ENST00000609301 899 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 AL357080.1-201ENST00000617394 239 ntBASIC4.95□□□□□ -1.62
TDP1Q9NUW8 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
TDP1Q9NUW8 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 Y_RNA.97-201ENST00000363094 102 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 RNA5SP397-201ENST00000391323 118 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 RN7SKP16-201ENST00000410180 299 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AL133384.1-201ENST00000412744 351 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 ELOCP17-201ENST00000414751 326 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC234779.1-201ENST00000425910 285 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 C8orf59P1-201ENST00000429930 303 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 RN7SL809P-201ENST00000482040 297 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC010460.1-201ENST00000507087 466 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC093809.1-201ENST00000509155 340 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 MTND5P4-201ENST00000514978 288 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC025881.1-201ENST00000518851 512 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 DUXAP2-201ENST00000519198 589 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 ZNF705CP-201ENST00000530515 889 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC008127.2-201ENST00000549925 1075 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AL359219.2-201ENST00000555184 348 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC006349.1-201ENST00000555526 235 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 MIR4504-201ENST00000577413 92 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 RN7SL652P-201ENST00000577769 300 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC090186.1-201ENST00000605991 572 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 MIR6758-201ENST00000620653 63 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AP002907.1-201ENST00000606361 1430 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 GDI2P1-201ENST00000429312 1336 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 AC092376.2-201ENST00000622621 4116 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 TEX21P-201ENST00000447107 1476 ntBASIC4.94□□□□□ -1.62
TDP1Q9NUW8 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
TDP1Q9NUW8 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 BTBD10P1-201ENST00000549824 1352 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RNU6-777P-201ENST00000364265 104 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RNU6-517P-201ENST00000384362 110 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RNU6-348P-201ENST00000384386 107 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RNU1-82P-201ENST00000390851 165 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 HMGB1P17-201ENST00000403495 628 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 ZNF603P-201ENST00000405613 487 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
TDP1Q9NUW8 RN7SKP267-201ENST00000410381 285 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 AL591848.1-201ENST00000413092 322 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 UBE2V1P10-201ENST00000414685 269 ntBASIC4.93□□□□□ -1.62
TDP1Q9NUW8 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms