Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNU6-1095P-201ENST00000516148 108 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 OR4R1P-201ENST00000529879 463 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AC126177.3-201ENST00000551839 688 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AL049872.1-201ENST00000556323 322 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AC098848.2-201ENST00000588023 330 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AC104458.1-201ENST00000608243 463 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 FRG1KP-201ENST00000623592 341 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 AL359955.1-201ENST00000455242 3275 ntBASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
TRAIPQ9BWF2 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AL159987.1-201ENST00000347911 293 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RN7SKP124-201ENST00000364730 341 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RNA5SP131-201ENST00000365452 119 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RNU6-108P-201ENST00000365558 107 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RGS17P1-201ENST00000423358 553 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 MTCO2P19-201ENST00000427513 598 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC012075.1-201ENST00000436549 580 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 KRT8P51-201ENST00000438938 274 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 WASF1P1-201ENST00000447560 1131 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC027673.1-201ENST00000456245 405 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RPL5P22-201ENST00000480199 884 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RPS3AP50-201ENST00000487064 803 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RN7SL284P-201ENST00000498823 275 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 ARL4AP2-201ENST00000507378 601 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC114797.1-201ENST00000514003 728 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 RNU2-10P-201ENST00000516375 211 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 Y_RNA.693-201ENST00000516641 110 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 MIR2117-201ENST00000516780 80 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AL133153.1-201ENST00000557756 303 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 LINC00622-201ENST00000562811 1570 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 OR4K8P-201ENST00000578842 1048 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AL512782.1-201ENST00000603093 364 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC010680.3-201ENST00000604215 520 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC008536.2-201ENST00000607284 349 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 AC244100.1-202ENST00000621554 382 ntBASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC6.29□□□□□ -1.4
TRAIPQ9BWF2 PAPPA-AS1-201ENST00000445861 2450 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 OSBPL9P4-201ENST00000371707 1800 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 RNU6-1120P-201ENST00000362988 108 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 RNU6-1322P-201ENST00000364309 107 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 U3.11-201ENST00000364476 212 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 RNU6-169P-201ENST00000365336 107 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 AL603766.1-201ENST00000407763 664 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 RNU4-65P-201ENST00000410473 140 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 RN7SKP17-201ENST00000411242 351 ntBASIC6.28□□□□□ -1.4
TRAIPQ9BWF2 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms