Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
NUP88Q99567 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NUP88Q99567 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
NUP88Q99567 SNRPEP3-201ENST00000338402 276 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
NUP88Q99567 OR6C69P-201ENST00000394268 893 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.23□□□□□ -1.57
NUP88Q99567 RN7SKP182-201ENST00000410772 298 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.23□□□□□ -1.57
NUP88Q99567 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.23□□□□□ -1.57
NUP88Q99567 AL358176.3-201ENST00000420757 454 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.23□□□□□ -1.57
NUP88Q99567 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.23□□□□□ -1.57
NUP88Q99567 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.23□□□□□ -1.57
NUP88Q99567 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NUP88Q99567 AC004975.1-201ENST00000428733 208 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 RPL23AP16-201ENST00000441715 421 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.23□□□□□ -1.57
NUP88Q99567 MTND2P4-201ENST00000445034 1004 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC104651.2-201ENST00000447549 528 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC005726.1-201ENST00000494679 427 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC108078.3-201ENST00000502633 489 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 MTCYBP43-201ENST00000513621 740 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC015795.1-201ENST00000513669 327 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC239860.2-201ENST00000525886 270 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 ZNF705CP-201ENST00000530515 889 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 CYCSP29-201ENST00000533731 318 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.23□□□□□ -1.57
NUP88Q99567 AC124068.1-201ENST00000563131 678 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.23□□□□□ -1.57
NUP88Q99567 BNIP3P11-201ENST00000603878 563 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC069304.2-201ENST00000605154 435 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AC009090.3-201ENST00000616553 565 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AL031667.3-201ENST00000620124 655 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NUP88Q99567 AC005332.5-201ENST00000591222 2919 ntBASIC5.23□□□□□ -1.57
NUP88Q99567 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 AC117529.2-201ENST00000512159 2068 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
NUP88Q99567 SSXP10-201ENST00000402595 565 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.22□□□□□ -1.57
NUP88Q99567 AC118469.1-201ENST00000442943 488 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 RPL26P28-201ENST00000451325 435 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 RPS27AP8-201ENST00000452665 445 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
NUP88Q99567 AC022790.1-201ENST00000522872 204 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 AL121766.1-201ENST00000547436 487 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.22□□□□□ -1.57
NUP88Q99567 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.22□□□□□ -1.57
NUP88Q99567 MIR3915-201ENST00000578518 97 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.22□□□□□ -1.57
NUP88Q99567 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 AC083899.3-201ENST00000603413 594 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 AC064807.4-201ENST00000607201 407 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 AC090948.2-201ENST00000607363 564 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.22□□□□□ -1.57
NUP88Q99567 MIR6716-201ENST00000613413 80 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.22□□□□□ -1.57
NUP88Q99567 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.22□□□□□ -1.57
NUP88Q99567 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC5.22□□□□□ -1.57
NUP88Q99567 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC5.22□□□□□ -1.57
NUP88Q99567 FP325313.1-201ENST00000638228 703 ntBASIC5.22□□□□□ -1.57
NUP88Q99567 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.22□□□□□ -1.57
NUP88Q99567 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
NUP88Q99567 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
NUP88Q99567 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.21□□□□□ -1.57
NUP88Q99567 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.21□□□□□ -1.57
NUP88Q99567 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
NUP88Q99567 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
NUP88Q99567 AC090971.4-201ENST00000560291 1800 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
NUP88Q99567 MTND4P34-201ENST00000572715 1371 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 SDHCP2-201ENST00000398565 501 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AL356967.1-201ENST00000406305 431 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 PIGPP2-201ENST00000411569 458 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AL133384.1-201ENST00000412744 351 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 RPS3AP9-201ENST00000417027 792 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 RPS15AP40-201ENST00000419621 391 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 SEPT2P1-201ENST00000419651 180 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 RAD23BP1-201ENST00000421404 1227 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.21□□□□□ -1.58
NUP88Q99567 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP88Q99567 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP88Q99567 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP88Q99567 PHBP16-201ENST00000446318 950 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP88Q99567 OR6C5P-201ENST00000452388 923 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AC097262.1-201ENST00000452559 548 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 DHFRP3-201ENST00000455595 559 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.21□□□□□ -1.58
NUP88Q99567 RPL31P3-201ENST00000458430 332 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 RN7SL98P-201ENST00000462271 300 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms