Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 VN1R42P-201ENST00000424651 344 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 RPS26P30-201ENST00000443431 335 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 snoU13.3-201ENST00000459441 104 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 RN7SKP289-201ENST00000517244 295 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 NDUFA5P2-201ENST00000519723 344 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC109635.4-202ENST00000531666 412 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 OSBPL9P3-201ENST00000534523 595 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC092747.2-201ENST00000545069 983 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC104229.1-201ENST00000561364 255 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC010735.1-201ENST00000567305 1026 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC106734.1-201ENST00000568646 663 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC012182.1-201ENST00000570133 895 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC113368.1-201ENST00000603736 382 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 BRDTP1-201ENST00000605735 677 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC092574.1-201ENST00000609771 420 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC097460.3-201ENST00000623099 442 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC073530.2-201ENST00000623987 261 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC091905.1-201ENST00000624400 311 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AC025263.3-201ENST00000622965 1396 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS39Q96JC1 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS39Q96JC1 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 MIR199A2-201ENST00000385289 110 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 AL121882.1-201ENST00000422893 417 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 AP000949.1-201ENST00000438328 629 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 AL049829.1-201ENST00000465411 156 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC084198.1-201ENST00000477747 402 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 PPIAP15-201ENST00000479662 484 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 TRBV12-2-201ENST00000489763 344 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 SUMO2P20-201ENST00000520803 283 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 IGKV2D-19-201ENST00000523346 262 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC004217.3-201ENST00000551552 878 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC022069.1-201ENST00000582910 658 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC005972.3-201ENST00000606304 481 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 XIST_intron.1-201ENST00000619444 68 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 MFSD8-213ENST00000641134 1327 ntBASIC3.85□□□□□ -1.79
VPS39Q96JC1 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS39Q96JC1 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
VPS39Q96JC1 AC006504.1-201ENST00000562493 3666 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS39Q96JC1 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS39Q96JC1 SNORD56.4-201ENST00000363883 71 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 RNU6-629P-201ENST00000384061 103 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 HSPE1P8-201ENST00000406997 288 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL445183.3-201ENST00000414168 502 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL356095.1-201ENST00000417217 199 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 Z97055.1-201ENST00000419730 712 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 MTCO2P1-201ENST00000424648 477 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC096632.1-201ENST00000427395 310 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC114973.1-201ENST00000429057 632 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL590103.1-201ENST00000434488 307 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 RPL7P52-201ENST00000449200 742 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 HMGN3P1-201ENST00000453847 193 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 RPL7P19-201ENST00000469948 618 ntBASIC3.84□□□□□ -1.79
VPS39Q96JC1 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS39Q96JC1 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms