Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC108078.3-201ENST00000502633 489 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC002456.2-201ENST00000509356 380 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 OR8G5-201ENST00000524943 1041 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC044913.1-201ENST00000557200 430 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 MIR5047-201ENST00000579212 100 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC128687.1-201ENST00000605304 619 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 AP005137.2-201ENST00000609238 400 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 MIR8058-201ENST00000615737 89 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 FAM35DP-201ENST00000323387 2712 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC111188.2-201ENST00000529697 1387 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VMP1Q96GC9 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VMP1Q96GC9 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VMP1Q96GC9 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VMP1Q96GC9 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 RNA5SP388-201ENST00000362584 119 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 RNA5SP307-201ENST00000362863 116 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 MCTS2P-201ENST00000394552 546 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 SNORA11F-201ENST00000408237 128 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 RNA5SP129-201ENST00000410276 118 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC011933.1-201ENST00000413334 321 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 COX6CP17-201ENST00000421389 185 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC013262.1-201ENST00000426710 252 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 UBE2V1P3-201ENST00000439651 417 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 RPS20P24-201ENST00000457473 361 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC116533.1-201ENST00000459748 321 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 RPS23P7-201ENST00000466210 444 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 RN7SL303P-201ENST00000469773 251 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC093267.1-201ENST00000489176 961 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC093801.2-201ENST00000503966 1050 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC026414.1-201ENST00000504046 698 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC016550.1-201ENST00000505348 785 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC023632.1-201ENST00000518463 375 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC019227.1-201ENST00000526902 510 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AP001317.1-201ENST00000531194 960 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC006254.3-201ENST00000603353 884 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC006329.2-201ENST00000611491 394 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC009318.4-201ENST00000620496 486 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC007546.2-201ENST00000623996 360 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
VMP1Q96GC9 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 AC140479.6-201ENST00000633535 357 ntBASIC4.09□□□□□ -1.75
VMP1Q96GC9 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
VMP1Q96GC9 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.09□□□□□ -1.76
VMP1Q96GC9 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
VMP1Q96GC9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
VMP1Q96GC9 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.76
VMP1Q96GC9 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.76
VMP1Q96GC9 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.08□□□□□ -1.76
VMP1Q96GC9 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VMP1Q96GC9 MIR331-201ENST00000362302 94 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 SNORD82-201ENST00000365530 70 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VMP1Q96GC9 OR6K3-202ENST00000368146 996 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 MIR591-201ENST00000385290 95 ntBASIC4.08□□□□□ -1.76
VMP1Q96GC9 SNORA74C-2-201ENST00000411179 201 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms