Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 DCAF13P3-201ENST00000561147 1334 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC000367.1-201ENST00000452711 1766 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 SNORD9-201ENST00000362566 104 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 RNU6-761P-201ENST00000384148 107 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 U8.11-201ENST00000384699 133 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 U8.12-201ENST00000384701 133 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 MIR34B-201ENST00000385076 84 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 HMGN2P31-201ENST00000432430 273 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 CST9LP2-201ENST00000437612 320 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 PPIAP3-201ENST00000450588 505 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 snoU13.24-201ENST00000458998 104 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 U8.18-201ENST00000459285 133 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 ST13P14-201ENST00000474095 734 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AP001960.1-201ENST00000506494 658 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 OR5D17P-201ENST00000531492 978 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC006270.2-201ENST00000578523 652 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 MIR4506-201ENST00000584693 77 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC084373.1-201ENST00000603311 235 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC015967.1-201ENST00000619893 476 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC007342.8-201ENST00000623278 678 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 MTND5P19-201ENST00000424872 1794 ntBASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC112Q8NEF3 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
CCDC112Q8NEF3 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.65□□□□□ -1.82
CCDC112Q8NEF3 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 SNORA51.4-201ENST00000364993 124 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 RNU6-167P-201ENST00000384292 106 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 RN7SKP111-201ENST00000410349 271 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 ATP5A1P2-201ENST00000412323 255 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 OR2B8P-201ENST00000432841 938 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 HSPD1P21-201ENST00000436541 245 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AL138799.3-201ENST00000438968 350 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AC115115.1-201ENST00000449927 248 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 TVP23BP2-201ENST00000455082 615 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 RNA5SP385-201ENST00000515947 110 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AP001207.2-201ENST00000519490 539 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AC007991.1-201ENST00000522680 631 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AL365400.2-201ENST00000605604 902 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 AC138649.5-201ENST00000637456 137 ntBASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC112Q8NEF3 GABPAP-201ENST00000419271 1356 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 MIR208A-201ENST00000362287 71 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 MIR218-2-201ENST00000385006 110 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 DBIP2-201ENST00000419076 262 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 RPS3AP12-201ENST00000443616 753 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 SNORD105B-201ENST00000458770 79 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 SNX5P1-201ENST00000505757 1041 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AC118282.1-201ENST00000506408 765 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AC119751.1-201ENST00000513357 765 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 SNORA70.18-201ENST00000516696 98 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AC022790.1-201ENST00000522872 204 ntBASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC112Q8NEF3 AC006116.10-201ENST00000591836 581 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms