Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FAM27B-201ENST00000610601 213 ntBASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 MIR6864-201ENST00000617935 70 ntBASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 AL356596.1-201ENST00000624230 379 ntBASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 AL445487.1-201ENST00000415694 1580 ntBASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.64□□□□□ -1.67
PTCHD3Q3KNS1 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC021242.1-201ENST00000507315 2035 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 MTND5P28-201ENST00000438005 1594 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RNU6-984P-201ENST00000363236 109 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RNA5SP505-201ENST00000364748 108 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RNU6-398P-201ENST00000384143 109 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC007066.1-201ENST00000392902 381 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RNU2-16P-201ENST00000410712 136 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC007899.1-201ENST00000412776 775 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RPS7P13-201ENST00000413955 498 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC096632.1-201ENST00000427395 310 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AL365184.2-201ENST00000431139 435 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 CDC27P1-201ENST00000445384 715 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AL031584.1-201ENST00000447169 754 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC073264.2-201ENST00000448886 166 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 CFTRP1-201ENST00000456646 183 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC006967.1-201ENST00000467608 589 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RN7SL459P-201ENST00000481078 302 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RN7SL346P-201ENST00000491561 294 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RPL23AP72-201ENST00000492447 435 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RN7SKP276-201ENST00000516242 268 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 IGHV3-32-201ENST00000519182 355 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 ZNF705CP-201ENST00000530515 889 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 OR5AN2P-201ENST00000534535 896 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AP006289.1-201ENST00000538089 277 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 GTF2IP22-201ENST00000554443 182 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC107214.2-201ENST00000608204 634 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC239868.4-201ENST00000608318 671 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 MIR6798-201ENST00000612887 67 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC010678.1-201ENST00000614118 713 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC015540.1-201ENST00000615828 501 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 DHX9P1-201ENST00000436565 3076 ntBASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.63□□□□□ -1.67
PTCHD3Q3KNS1 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 A2MP1-204ENST00000566278 4130 ntBASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 AL451142.2-201ENST00000429076 2090 ntBASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
PTCHD3Q3KNS1 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms