Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA3P55318 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA3P55318 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA3P55318 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA3P55318 ELOCP11-201ENST00000436690 332 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 CEACAMP9-201ENST00000442990 513 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA3P55318 ELOCP16-201ENST00000444494 332 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA3P55318 NF1P3-201ENST00000457709 450 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 RPS26P21-201ENST00000475397 348 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 TPT1P3-201ENST00000492841 512 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AL139099.1-201ENST00000497398 403 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AC093755.1-201ENST00000512950 1023 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 RN7SKP21-201ENST00000516503 220 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA3P55318 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA3P55318 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA3P55318 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA3P55318 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC2.46□□□□□ -2.02
FOXA3P55318 NACA-211ENST00000548563 827 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA3P55318 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC2.46□□□□□ -2.02
FOXA3P55318 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA3P55318 MIR4284-201ENST00000578924 81 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AC015917.1-201ENST00000579654 510 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AC020914.6-201ENST00000594327 272 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AL109653.1-201ENST00000603091 248 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 MTCO2P22-201ENST00000603246 681 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA3P55318 AL445423.1-201ENST00000609941 536 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AC005962.2-201ENST00000611427 652 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA3P55318 AC026951.1-201ENST00000559530 2459 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA3P55318 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA3P55318 XPOTP1-201ENST00000443317 2398 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
FOXA3P55318 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA3P55318 RNA5SP119-201ENST00000362715 117 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 RNA5SP283-201ENST00000365604 119 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA3P55318 SNORD3H-201ENST00000384486 214 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 RNA5SP498-201ENST00000411342 120 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA3P55318 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA3P55318 AL031663.1-201ENST00000437445 219 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA3P55318 HMGB3P6-201ENST00000444896 598 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA3P55318 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.45□□□□□ -2.02
FOXA3P55318 RPL7P52-201ENST00000449200 742 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA3P55318 RPL21P18-201ENST00000469899 480 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 RPL23AP55-201ENST00000498163 452 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AP001960.1-201ENST00000506494 658 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AC034205.1-201ENST00000520621 638 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 OR8L1P-201ENST00000534005 955 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AP000619.3-201ENST00000535634 1127 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA3P55318 CR383656.6-201ENST00000550518 394 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA3P55318 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC2.45□□□□□ -2.02
FOXA3P55318 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA3P55318 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA3P55318 AC006116.10-201ENST00000591836 581 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 YWHAQP7-201ENST00000603536 658 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AC113194.1-201ENST00000606037 500 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA3P55318 MIR7851-201ENST00000610611 160 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 AC091903.1-201ENST00000624322 454 ntBASIC2.45□□□□□ -2.02
FOXA3P55318 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
FOXA3P55318 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA3P55318 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA3P55318 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA3P55318 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.45□□□□□ -2.02
FOXA3P55318 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 AL645937.1-201ENST00000641739 1652 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 MTCO1P8-201ENST00000416914 1523 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AC010733.2-201ENST00000589496 5702 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 SPRR2C-201ENST00000290702 219 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 RNU1-32P-201ENST00000363937 159 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 RNA5SP51-201ENST00000364750 119 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 MIR585-201ENST00000384887 94 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 RNU1-101P-201ENST00000391171 127 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AL031121.1-201ENST00000406553 254 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 RNA5SP344-201ENST00000411081 104 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 RNU2-71P-201ENST00000411395 189 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA3P55318 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA3P55318 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA3P55318 RPS24P8-201ENST00000431490 402 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 ARL5AP2-201ENST00000444698 533 ntBASIC2.44□□□□□ -2.02
FOXA3P55318 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms