Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL136164.3-201ENST00000624429 3978 ntBASIC3.66□□□□□ -1.82
CDX1P47902 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CDX1P47902 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.66□□□□□ -1.82
CDX1P47902 AC010928.1-201ENST00000592477 1447 ntBASIC3.66□□□□□ -1.82
CDX1P47902 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDX1P47902 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDX1P47902 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.66□□□□□ -1.82
CDX1P47902 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDX1P47902 AC095050.2-201ENST00000510748 1458 ntBASIC3.66□□□□□ -1.82
CDX1P47902 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDX1P47902 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
CDX1P47902 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CDX1P47902 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CDX1P47902 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CDX1P47902 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.65□□□□□ -1.82
CDX1P47902 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CDX1P47902 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.65□□□□□ -1.82
CDX1P47902 SNRPEP3-201ENST00000338402 276 ntBASIC3.65□□□□□ -1.83
CDX1P47902 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.65□□□□□ -1.83
CDX1P47902 RNA5SP322-201ENST00000363617 119 ntBASIC3.65□□□□□ -1.83
CDX1P47902 SNORD113.2-201ENST00000364166 89 ntBASIC3.65□□□□□ -1.83
CDX1P47902 SNORA71.2-201ENST00000364941 134 ntBASIC3.65□□□□□ -1.83
CDX1P47902 RNA5SP22-201ENST00000365393 109 ntBASIC3.65□□□□□ -1.83
CDX1P47902 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CDX1P47902 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CDX1P47902 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CDX1P47902 RNU1-82P-201ENST00000390851 165 ntBASIC3.65□□□□□ -1.83
CDX1P47902 RNA5SP397-201ENST00000391323 118 ntBASIC3.65□□□□□ -1.83
CDX1P47902 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CDX1P47902 AL590762.2-201ENST00000395798 571 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AL450338.1-201ENST00000407987 512 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.65□□□□□ -1.83
CDX1P47902 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 AC062016.2-201ENST00000420950 676 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC244098.2-201ENST00000422068 99 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.65□□□□□ -1.83
CDX1P47902 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.65□□□□□ -1.83
CDX1P47902 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 RPL12P26-201ENST00000452430 487 ntBASIC3.65□□□□□ -1.83
CDX1P47902 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.65□□□□□ -1.83
CDX1P47902 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 AP000873.1-201ENST00000463987 400 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC090142.1-201ENST00000465776 462 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC090013.1-201ENST00000485147 480 ntBASIC3.65□□□□□ -1.83
CDX1P47902 NCOR1P1-202ENST00000486162 291 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC108729.1-201ENST00000487812 947 ntBASIC3.65□□□□□ -1.83
CDX1P47902 RPL5P23-201ENST00000496040 868 ntBASIC3.65□□□□□ -1.83
CDX1P47902 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 RN7SKP92-201ENST00000517266 244 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.65□□□□□ -1.83
CDX1P47902 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.65□□□□□ -1.83
CDX1P47902 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 SLC2A13P1-201ENST00000531560 322 ntBASIC3.65□□□□□ -1.83
CDX1P47902 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.65□□□□□ -1.83
CDX1P47902 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.65□□□□□ -1.83
CDX1P47902 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 MTND4P33-201ENST00000556706 766 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 AC093249.4-201ENST00000564755 259 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 LARP7P2-201ENST00000575306 125 ntBASIC3.65□□□□□ -1.83
CDX1P47902 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 AP000346.3-201ENST00000622821 210 ntBASIC3.65□□□□□ -1.83
CDX1P47902 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 MTND2P41-201ENST00000637599 773 ntBASIC3.65□□□□□ -1.83
CDX1P47902 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 ZNF137P-201ENST00000456718 1920 ntBASIC3.65□□□□□ -1.83
CDX1P47902 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.65□□□□□ -1.83
CDX1P47902 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CDX1P47902 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CDX1P47902 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
CDX1P47902 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
CDX1P47902 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.64□□□□□ -1.83
CDX1P47902 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CDX1P47902 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.64□□□□□ -1.83
CDX1P47902 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CDX1P47902 MFSD8-216ENST00000641147 4009 ntBASIC3.64□□□□□ -1.83
CDX1P47902 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CDX1P47902 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CDX1P47902 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
CDX1P47902 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CDX1P47902 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CDX1P47902 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CDX1P47902 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
CDX1P47902 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CDX1P47902 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CDX1P47902 RNA5SP505-201ENST00000364748 108 ntBASIC3.64□□□□□ -1.83
CDX1P47902 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.64□□□□□ -1.83
CDX1P47902 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CDX1P47902 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.64□□□□□ -1.83
CDX1P47902 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CDX1P47902 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.64□□□□□ -1.83
CDX1P47902 RN7SKP56-201ENST00000410513 331 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms