Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU1-14P-201ENST00000362759 152 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 MIR1179-201ENST00000408703 91 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 RN7SKP235-201ENST00000410662 305 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 AL160275.2-201ENST00000412010 394 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.45□□□□□ -1.7
PTPN9P43378 AL592293.2-201ENST00000422292 996 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 RPP40P1-201ENST00000426762 456 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 RPS3AP54-201ENST00000435535 734 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 MTND5P2-201ENST00000442927 1142 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PTPN9P43378 RPS26P56-201ENST00000444468 240 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AL606662.1-201ENST00000445763 553 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 RSL24D1P3-201ENST00000449255 495 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 TPT1P13-201ENST00000449760 499 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 NDUFA5P7-201ENST00000452914 242 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AL121877.1-201ENST00000453704 622 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 MTND1P16-201ENST00000465177 898 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.45□□□□□ -1.7
PTPN9P43378 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 PGBD4P4-201ENST00000509673 613 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 MTCO1P47-201ENST00000523889 1271 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.45□□□□□ -1.7
PTPN9P43378 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PTPN9P43378 HIGD1AP17-201ENST00000554576 276 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 AC090312.1-201ENST00000580637 348 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC4.45□□□□□ -1.7
PTPN9P43378 RPL26P30-202ENST00000602923 645 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AC026368.1-201ENST00000614934 690 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 AC026422.1-201ENST00000623961 452 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 MIR7641-1-201ENST00000627518 61 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 AC116618.1-201ENST00000634617 774 ntBASIC4.45□□□□□ -1.7
PTPN9P43378 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
PTPN9P43378 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTPN9P43378 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PTPN9P43378 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.44□□□□□ -1.7
PTPN9P43378 ASNSP1-201ENST00000518311 1939 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN9P43378 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN9P43378 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN9P43378 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN9P43378 Y_RNA.169-201ENST00000363745 96 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 RNU1-132P-201ENST00000364300 164 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN9P43378 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTPN9P43378 Y_RNA.408-201ENST00000383987 102 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 SNORD116-2-201ENST00000384274 95 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 SNORD116-6-201ENST00000384711 96 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
PTPN9P43378 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN9P43378 AC098592.1-201ENST00000419352 333 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 RPL31P54-201ENST00000429803 370 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN9P43378 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.44□□□□□ -1.7
PTPN9P43378 MTND2P22-201ENST00000444325 1033 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 MTCYBP3-201ENST00000445588 1137 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN9P43378 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN9P43378 AC010469.1-201ENST00000463864 576 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
PTPN9P43378 RN7SL303P-201ENST00000469773 251 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.44□□□□□ -1.7
PTPN9P43378 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN9P43378 AC006499.6-201ENST00000511169 607 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 HNRNPKP5-201ENST00000515300 253 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 RNA5SP49-201ENST00000516450 115 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 SNORA48.10-201ENST00000516965 160 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN9P43378 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN9P43378 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.44□□□□□ -1.7
PTPN9P43378 UBE2NP1-201ENST00000545592 458 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.44□□□□□ -1.7
PTPN9P43378 TRAV15-201ENST00000556680 249 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 HMGB3P26-201ENST00000560051 582 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 AC138915.2-201ENST00000569776 97 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 AC074051.3-201ENST00000570238 358 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.44□□□□□ -1.7
PTPN9P43378 MIR4999-201ENST00000585029 91 ntBASIC4.44□□□□□ -1.7
PTPN9P43378 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms