Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 MTND4LP21-201ENST00000415303 295 ntBASIC5.52□□□□□ -1.53
CUX2O14529 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC5.52□□□□□ -1.53
CUX2O14529 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.52□□□□□ -1.53
CUX2O14529 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.52□□□□□ -1.53
CUX2O14529 HMGB1P16-201ENST00000447155 540 ntBASIC5.52□□□□□ -1.53
CUX2O14529 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC5.52□□□□□ -1.53
CUX2O14529 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC5.52□□□□□ -1.53
CUX2O14529 AC009812.2-201ENST00000517657 457 ntBASIC5.52□□□□□ -1.53
CUX2O14529 AC010306.1-201ENST00000523223 1117 ntBASIC5.52□□□□□ -1.53
CUX2O14529 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC5.52□□□□□ -1.53
CUX2O14529 AC234775.3-201ENST00000564612 656 ntBASIC5.52□□□□□ -1.53
CUX2O14529 UBL5P2-201ENST00000583788 219 ntBASIC5.52□□□□□ -1.53
CUX2O14529 AC025754.2-201ENST00000606491 432 ntBASIC5.52□□□□□ -1.53
CUX2O14529 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CUX2O14529 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CUX2O14529 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CUX2O14529 AL589994.1-201ENST00000404962 340 ntBASIC5.51□□□□□ -1.53
CUX2O14529 RN7SKP56-201ENST00000410513 331 ntBASIC5.51□□□□□ -1.53
CUX2O14529 AC105402.1-201ENST00000413336 545 ntBASIC5.51□□□□□ -1.53
CUX2O14529 RPS26P47-201ENST00000427219 348 ntBASIC5.51□□□□□ -1.53
CUX2O14529 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC5.51□□□□□ -1.53
CUX2O14529 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CUX2O14529 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.51□□□□□ -1.53
CUX2O14529 AC115989.2-201ENST00000578640 563 ntBASIC5.51□□□□□ -1.53
CUX2O14529 CYCSP41-201ENST00000616920 296 ntBASIC5.51□□□□□ -1.53
CUX2O14529 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.51□□□□□ -1.53
CUX2O14529 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CUX2O14529 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC5.51□□□□□ -1.53
CUX2O14529 AC002075.2-201ENST00000425207 252 ntBASIC5.51□□□□□ -1.53
CUX2O14529 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.51□□□□□ -1.53
CUX2O14529 AC022018.1-201ENST00000430685 241 ntBASIC5.51□□□□□ -1.53
CUX2O14529 AC005229.2-201ENST00000456995 399 ntBASIC5.51□□□□□ -1.53
CUX2O14529 AC099560.2-201ENST00000457554 255 ntBASIC5.51□□□□□ -1.53
CUX2O14529 RPL23AP73-201ENST00000492507 471 ntBASIC5.51□□□□□ -1.53
CUX2O14529 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.51□□□□□ -1.53
CUX2O14529 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.51□□□□□ -1.53
CUX2O14529 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.51□□□□□ -1.53
CUX2O14529 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.51□□□□□ -1.53
CUX2O14529 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.51□□□□□ -1.53
CUX2O14529 AL162574.2-201ENST00000614618 657 ntBASIC5.51□□□□□ -1.53
CUX2O14529 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC5.51□□□□□ -1.53
CUX2O14529 AC241585.2-209ENST00000638217 143 ntBASIC5.51□□□□□ -1.53
CUX2O14529 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
CUX2O14529 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CUX2O14529 MAPK6PS3-201ENST00000403865 2162 ntBASIC5.5□□□□□ -1.53
CUX2O14529 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CUX2O14529 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CUX2O14529 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CUX2O14529 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5.5□□□□□ -1.53
CUX2O14529 AL645937.1-202ENST00000421799 937 ntBASIC5.5□□□□□ -1.53
CUX2O14529 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.5□□□□□ -1.53
CUX2O14529 AC008264.1-201ENST00000447612 367 ntBASIC5.5□□□□□ -1.53
CUX2O14529 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC5.5□□□□□ -1.53
CUX2O14529 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.5□□□□□ -1.53
CUX2O14529 HMGB1P3-201ENST00000502802 616 ntBASIC5.5□□□□□ -1.53
CUX2O14529 HIGD1AP13-201ENST00000509878 289 ntBASIC5.5□□□□□ -1.53
CUX2O14529 AP002812.4-201ENST00000532139 286 ntBASIC5.5□□□□□ -1.53
CUX2O14529 AC015712.3-201ENST00000559380 164 ntBASIC5.5□□□□□ -1.53
CUX2O14529 AC007619.2-201ENST00000605743 379 ntBASIC5.5□□□□□ -1.53
CUX2O14529 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CUX2O14529 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CUX2O14529 AC073073.2-201ENST00000609827 2578 ntBASIC5.5□□□□□ -1.53
CUX2O14529 IDE-202ENST00000371581 4480 ntTSL 2 BASIC5.49□□□□□ -1.53
CUX2O14529 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CUX2O14529 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CUX2O14529 AC068647.1-201ENST00000489539 2265 ntBASIC5.49□□□□□ -1.53
CUX2O14529 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CUX2O14529 Y_RNA.466-201ENST00000384294 113 ntBASIC5.49□□□□□ -1.53
CUX2O14529 RN7SKP192-201ENST00000411291 327 ntBASIC5.49□□□□□ -1.53
CUX2O14529 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.49□□□□□ -1.53
CUX2O14529 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.49□□□□□ -1.53
CUX2O14529 CBX1P4-201ENST00000439415 457 ntBASIC5.49□□□□□ -1.53
CUX2O14529 ANXA2P1-201ENST00000505539 926 ntBASIC5.49□□□□□ -1.53
CUX2O14529 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.49□□□□□ -1.53
CUX2O14529 OR5AP1P-201ENST00000529730 940 ntBASIC5.49□□□□□ -1.53
CUX2O14529 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.49□□□□□ -1.53
CUX2O14529 AC096586.2-201ENST00000610260 441 ntBASIC5.49□□□□□ -1.53
CUX2O14529 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC5.49□□□□□ -1.53
CUX2O14529 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.49□□□□□ -1.53
CUX2O14529 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
CUX2O14529 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
CUX2O14529 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CUX2O14529 AC093909.5-201ENST00000621839 1799 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AL356057.1-202ENST00000402263 756 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AC112492.1-201ENST00000449607 712 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AC025423.2-201ENST00000537570 439 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AP002770.2-201ENST00000543613 532 ntBASIC5.48□□□□□ -1.53
CUX2O14529 OR11H5P-201ENST00000554039 926 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AL358913.1-201ENST00000554342 121 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.48□□□□□ -1.53
CUX2O14529 AC004832.5-201ENST00000608677 401 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC5.48□□□□□ -1.53
CUX2O14529 CR383658.2-201ENST00000547576 1525 ntBASIC5.48□□□□□ -1.53
CUX2O14529 AC116158.1-201ENST00000560231 2129 ntBASIC5.48□□□□□ -1.53
CUX2O14529 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.48□□□□□ -1.53
CUX2O14529 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
CUX2O14529 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CUX2O14529 ZNF658B-202ENST00000615961 3375 ntBASIC5.47□□□□□ -1.53
CUX2O14529 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CUX2O14529 ATP8A2P2-201ENST00000437678 1568 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms