Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC010285.3-201ENST00000511668 676 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC008837.2-201ENST00000513076 418 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MTND2P26-201ENST00000528255 1029 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC010198.2-201ENST00000550612 259 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AGGF1P6-201ENST00000569213 976 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC008088.1-201ENST00000580993 280 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MIR3138-201ENST00000585238 82 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 VN1R84P-201ENST00000593697 235 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC104662.1-201ENST00000604448 511 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC009318.3-201ENST00000616916 503 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC103858.2-201ENST00000621471 543 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MIR3653-201ENST00000625572 110 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MIR1322-201ENST00000638013 71 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MARK2P15-201ENST00000432204 2186 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 ERCC6-202ENST00000374127 1782 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 OR11H5P-202ENST00000641612 1325 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 Y_RNA.192-201ENST00000363977 102 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 OR6C69P-201ENST00000394268 893 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC006960.1-201ENST00000419980 153 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC007435.1-201ENST00000421086 415 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AL365338.1-201ENST00000422282 858 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 MTCO1P54-201ENST00000430139 712 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC011742.1-201ENST00000431448 434 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 SEPT7P5-201ENST00000434048 306 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 GTF2IP7-202ENST00000436677 309 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 RPL23AP46-201ENST00000438548 490 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC093155.1-201ENST00000440164 826 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 TPMTP4-201ENST00000450749 678 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 HMGB3P22-202ENST00000451823 572 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 ART2BP-201ENST00000453501 499 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC015724.1-201ENST00000478577 156 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 BET1P1-201ENST00000482276 359 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AP003461.1-201ENST00000528866 78 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 PDCL2P2-201ENST00000533651 189 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AL442163.2-201ENST00000553912 710 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 NBEAP1-201ENST00000554452 979 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC079171.1-201ENST00000568788 914 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 MIR4666A-201ENST00000580160 79 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC023575.1-201ENST00000580510 358 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC013444.2-201ENST00000603317 787 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AL161729.3-201ENST00000603533 673 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC010680.3-201ENST00000604215 520 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 ARF4P1-201ENST00000605447 541 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC128687.2-201ENST00000609657 566 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 MLECP1-201ENST00000615893 709 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AP000676.3-201ENST00000623299 569 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 AC007490.1-201ENST00000624321 703 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 USP9YP4-201ENST00000424401 1745 ntBASIC4.26□□□□□ -1.73
PCDH9Q9HC56 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCDH9Q9HC56 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCDH9Q9HC56 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCDH9Q9HC56 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.25□□□□□ -1.73
PCDH9Q9HC56 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCDH9Q9HC56 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms