Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL672296.1-201ENST00000427780 2158 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 RPL21P3-201ENST00000395517 478 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 CCNB2P1-201ENST00000399411 1150 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 SYF2P2-201ENST00000417620 583 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 RPL31P45-201ENST00000419532 356 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 TRIAP1P1-201ENST00000427062 225 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL035246.1-201ENST00000433554 1255 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 CYCSP43-201ENST00000438233 310 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC092641.1-201ENST00000440229 772 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 RPL21P23-201ENST00000446654 460 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC146507.2-201ENST00000460608 476 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 MTND4LP31-201ENST00000514859 294 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 RNU2-58P-201ENST00000516403 183 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 OR4U1P-201ENST00000554958 912 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC092868.3-201ENST00000560515 784 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 MIR3160-1-201ENST00000577972 85 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC112230.1-201ENST00000604342 547 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL162713.1-201ENST00000604480 262 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL157817.1-201ENST00000614264 790 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AL133370.2-201ENST00000619934 439 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC243312.2-201ENST00000623340 601 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 MIR4278-201ENST00000636094 69 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 AC119674.1-212ENST00000641155 993 ntBASIC3.48□□□□□ -1.85
CCDC42Q96M95 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC42Q96M95 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC42Q96M95 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC42Q96M95 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 MAPK10-362ENST00000641864 4484 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC42Q96M95 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 AC012498.1-201ENST00000424037 437 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 MTCYBP21-201ENST00000443300 1113 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 RNU7-27P-201ENST00000459281 62 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 AC078817.1-201ENST00000492623 435 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 RN7SKP21-201ENST00000516503 220 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 IGKV2D-19-201ENST00000523346 262 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 AL355816.1-201ENST00000607951 118 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 AC024941.1-201ENST00000612250 334 ntBASIC3.47□□□□□ -1.85
CCDC42Q96M95 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC42Q96M95 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC42Q96M95 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC42Q96M95 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
CCDC42Q96M95 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.46□□□□□ -1.85
CCDC42Q96M95 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC42Q96M95 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 RNA5SP515-201ENST00000364570 118 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC42Q96M95 MIR218-2-201ENST00000385006 110 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 SNORD65-201ENST00000391079 73 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 AC016769.2-201ENST00000414815 475 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 OR2AS1P-201ENST00000427827 319 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 ELOCP6-201ENST00000429066 328 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 RPL21P110-201ENST00000433345 446 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 HSPD1P21-201ENST00000436541 245 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 CBX1P4-201ENST00000439415 457 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 AL353898.1-201ENST00000444055 238 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 HMGB3P6-201ENST00000444896 598 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 ELOCP12-201ENST00000458706 328 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 RPL7P38-201ENST00000488396 739 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 RNU4-18P-201ENST00000516751 149 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 OR4T1P-201ENST00000554933 911 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC42Q96M95 AC048347.1-201ENST00000624621 427 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms