Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 OFD1P6Y-202ENST00000451061 2724 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RNA5SP305-201ENST00000362665 119 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 MIR181A2-201ENST00000384863 110 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 MIR143-201ENST00000385300 106 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC110754.1-201ENST00000399740 601 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RNU4-6P-201ENST00000410804 122 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RPL37P6-202ENST00000464216 403 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC008155.2-201ENST00000464337 397 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC091153.1-201ENST00000466297 402 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RN7SL601P-201ENST00000471221 293 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RN7SL20P-201ENST00000488827 297 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC135721.1-201ENST00000497954 479 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 OR2A20P-203ENST00000498397 1268 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 VTRNA2-2P-201ENST00000516091 103 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RPPH1-2P-201ENST00000516688 293 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 STX3-204ENST00000530221 534 ntTSL 5 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 NDUFA5P11-201ENST00000567995 343 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 MIR3922-201ENST00000585192 84 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AL157817.1-201ENST00000614264 790 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AL591926.1-201ENST00000620542 217 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 U4.6-201ENST00000621618 127 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC110792.3-201ENST00000595906 1614 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 AC138915.1-201ENST00000565427 1685 ntBASIC1.86□□□□□ -2.11
LINC00643Q86TS7 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 PABPC1P6-201ENST00000445594 1829 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 RNA5SP197-201ENST00000363357 119 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 RNU6-1027P-201ENST00000383998 107 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 MIR197-201ENST00000384976 75 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 RN7SKP111-201ENST00000410349 271 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 BX510359.3-201ENST00000422168 306 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC002069.1-201ENST00000429649 1159 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC008072.1-201ENST00000434254 824 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AL590399.6-201ENST00000446396 307 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 MRPL50P4-201ENST00000446432 475 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 RPL36AP55-201ENST00000454114 305 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 RN7SL170P-201ENST00000487098 295 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 ENSA-210ENST00000503241 574 ntTSL 3 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 DSTNP2-201ENST00000504533 515 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 NAMPTP2-201ENST00000505629 1115 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 SSX6-203ENST00000509958 336 ntTSL 3 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 RNA5SP82-201ENST00000516707 92 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC004803.1-202ENST00000545629 569 ntTSL 3 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 SARNP-203ENST00000552080 726 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 MIR3691-201ENST00000578066 90 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AC073657.2-201ENST00000605661 303 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 AL161734.1-201ENST00000609720 557 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 MIR8059-201ENST00000620427 81 ntBASIC1.85□□□□□ -2.11
LINC00643Q86TS7 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
LINC00643Q86TS7 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 DHX40P1-201ENST00000588725 1412 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AL139276.1-201ENST00000311910 1001 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 RNU1-35P-201ENST00000362782 153 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 SNORA14A-201ENST00000364773 135 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms