Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC009313.2-201ENST00000417893 1941 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA1P55317 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA1P55317 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA1P55317 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA1P55317 USP8P1-201ENST00000494673 3183 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 RNU4-23P-201ENST00000362839 140 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 RNU6-146P-201ENST00000384602 108 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 SNORD65-201ENST00000391079 73 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC007899.1-201ENST00000412776 775 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC245052.5-201ENST00000416320 649 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA1P55317 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA1P55317 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA1P55317 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA1P55317 MTCO1P45-201ENST00000431457 267 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 HMGN2P31-201ENST00000432430 273 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 GOT2P5-201ENST00000433995 546 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 VN1R34P-201ENST00000447387 883 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 CALM1P2-201ENST00000452941 448 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA1P55317 ST13P14-201ENST00000474095 734 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC093278.1-201ENST00000494700 600 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 TRAV31-201ENST00000502780 342 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 KCTD9P5-201ENST00000504141 1170 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 ATG10-AS1-201ENST00000504846 648 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA1P55317 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA1P55317 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA1P55317 AC084373.1-201ENST00000603311 235 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC123786.2-201ENST00000603459 275 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC034236.3-201ENST00000605999 461 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA1P55317 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA1P55317 AC009464.1-201ENST00000615731 469 ntBASIC3.1□□□□□ -1.91
FOXA1P55317 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
FOXA1P55317 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA1P55317 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA1P55317 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA1P55317 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA1P55317 AL583834.1-201ENST00000406943 343 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 RPL32P35-201ENST00000415214 394 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXA1P55317 AC069540.1-201ENST00000446320 988 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA1P55317 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
FOXA1P55317 AC104629.2-201ENST00000468627 598 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 AP000893.1-201ENST00000474462 794 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA1P55317 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 OR8I1P-201ENST00000529291 931 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA1P55317 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA1P55317 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 MIR5047-201ENST00000579212 100 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 ZNF415P1-201ENST00000582279 1166 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA1P55317 AL591516.1-201ENST00000611326 274 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 AL157817.1-201ENST00000614264 790 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 AC018816.2-201ENST00000621460 353 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 AC092159.4-201ENST00000624944 550 ntBASIC3.09□□□□□ -1.91
FOXA1P55317 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA1P55317 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.09□□□□□ -1.92
FOXA1P55317 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
FOXA1P55317 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.92
FOXA1P55317 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
FOXA1P55317 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
FOXA1P55317 PTMAP5-201ENST00000393073 333 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 RPL21P3-201ENST00000395517 478 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 AL034374.1-201ENST00000406329 351 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 RNU6-564P-201ENST00000410983 104 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA1P55317 RPS12P18-201ENST00000442381 270 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 HMGB3P6-201ENST00000444896 598 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 AL358232.1-201ENST00000448030 501 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 AC146507.2-201ENST00000460608 476 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 RN7SL75P-201ENST00000461926 281 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA1P55317 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA1P55317 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA1P55317 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA1P55317 NPM1P35-201ENST00000533043 868 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 HIGD1AP1-201ENST00000550979 275 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA1P55317 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXA1P55317 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXA1P55317 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.08□□□□□ -1.92
FOXA1P55317 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC3.08□□□□□ -1.92
FOXA1P55317 uc_338.25-201ENST00000613756 156 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 MIR6075-201ENST00000620782 95 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 C2orf27A-204ENST00000623058 969 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms