Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC004854.1-201ENST00000440356 349 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC004022.1-201ENST00000447766 1066 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 RPS26P3-201ENST00000470205 348 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 RPL23AP44-201ENST00000482216 473 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC090543.2-201ENST00000483963 348 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC004057.1-201ENST00000485827 348 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 MTCYBP37-201ENST00000510642 1133 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC008958.1-201ENST00000511047 682 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 HMGB3P13-201ENST00000511263 607 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS28Q9UK41 RNA5SP49-201ENST00000516450 115 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 GTF2IP8-201ENST00000560687 584 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 MTND3P13-201ENST00000574391 343 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC107982.3-201ENST00000584957 985 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 BNIP3P40-201ENST00000596017 556 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC245884.10-201ENST00000597355 337 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL390838.2-201ENST00000602394 274 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL160237.3-201ENST00000604114 1013 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC025588.3-201ENST00000604182 274 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC112230.1-201ENST00000604342 547 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL031666.3-201ENST00000609320 1006 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC024257.5-201ENST00000612739 531 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AL445567.2-201ENST00000618935 498 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 AC007546.1-201ENST00000619452 559 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 OR4G3P-201ENST00000633500 913 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
VPS28Q9UK41 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS28Q9UK41 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS28Q9UK41 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.4□□□□□ -1.71
VPS28Q9UK41 IQCB2P-201ENST00000401788 1633 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC011266.1-201ENST00000624119 3569 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 RPL23AP47-201ENST00000408017 460 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 RNA5SP36-201ENST00000410197 133 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 RSL24D1P6-201ENST00000426934 401 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 VDAC1P6-201ENST00000430062 855 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 FTH1P6-201ENST00000430768 320 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 AL356276.2-201ENST00000435919 558 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC013828.1-201ENST00000481845 158 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC093267.1-201ENST00000489176 961 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 RN7SL691P-201ENST00000494487 301 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 PRELID3BP5-201ENST00000508612 460 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AL592156.1-201ENST00000508758 304 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 RNA5SP519-201ENST00000516480 119 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 IGKV2D-36-201ENST00000518643 226 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 PTK2-220ENST00000520151 573 ntTSL 4 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC087808.1-201ENST00000520501 361 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 MRPL49P2-201ENST00000521066 465 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 CYCSP29-201ENST00000533731 318 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC136624.4-201ENST00000573044 370 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC021749.1-201ENST00000604322 607 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AL157392.4-201ENST00000609756 345 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC023043.4-201ENST00000612081 449 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AL354976.1-201ENST00000613843 387 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AL731566.2-201ENST00000618971 317 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 MIR4727-201ENST00000622232 55 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 AL445363.3-201ENST00000623080 671 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 LINC02211-204ENST00000642024 1070 ntBASIC4.39□□□□□ -1.71
VPS28Q9UK41 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS28Q9UK41 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS28Q9UK41 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS28Q9UK41 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS28Q9UK41 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms