Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 RNU6-611P-201ENST00000384276 104 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 Y_RNA.471-201ENST00000384312 102 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 RNA5SP53-201ENST00000391299 120 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 MRPL32P1-201ENST00000406301 247 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 AL139100.1-201ENST00000408001 498 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 SNORA11D-201ENST00000408548 128 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 SNORA11E-201ENST00000408778 128 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 RNA5SP178-201ENST00000410380 128 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 RNU6-1203P-201ENST00000410703 110 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 UBE2FP1-201ENST00000416536 447 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC098831.1-201ENST00000440661 216 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 RPSAP7-201ENST00000456871 885 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 snoU13.7-201ENST00000459220 104 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 RNU7-138P-201ENST00000459479 64 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 RN7SL456P-201ENST00000469290 295 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 RNU6-1212P-201ENST00000517023 104 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 RNA5SP400-201ENST00000517155 111 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AP001803.1-201ENST00000525668 147 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC073410.2-201ENST00000603240 332 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 AL355877.2-201ENST00000603670 358 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC005191.1-201ENST00000603950 358 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 AL121809.2-201ENST00000613169 341 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 AL121985.3-201ENST00000620690 523 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AL033543.1-201ENST00000623440 13454 ntBASIC6.32□□□□□ -1.4
USB1Q9BQ65 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USB1Q9BQ65 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
USB1Q9BQ65 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 OR52B3P-201ENST00000314715 928 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
USB1Q9BQ65 MIR335-201ENST00000362173 94 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 RNU6-1017P-201ENST00000363613 106 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 Y_RNA.183-201ENST00000363882 113 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 RNU6-1329P-201ENST00000365664 107 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 RNU6-637P-201ENST00000384050 107 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 Y_RNA.506-201ENST00000384494 102 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 RNA5SP35-201ENST00000391257 129 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 SNORD58.1-201ENST00000391313 66 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 AL133260.1-201ENST00000405720 405 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 MICG-208ENST00000416822 132 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 UBE2D3P2-201ENST00000424409 445 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 RPL12P17-201ENST00000432393 498 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 GLRXP3-201ENST00000470810 321 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC004453.1-201ENST00000487895 408 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 LINC01085-203ENST00000511195 326 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC027801.3-201ENST00000515049 698 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 CDH12P4-201ENST00000517835 295 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 CDH12P3-201ENST00000517935 295 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 CDH12P1-201ENST00000518435 295 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 IGHVIII-26-1-201ENST00000520387 250 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 OR5M6P-201ENST00000530227 937 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 CBX3P8-201ENST00000532412 525 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 NDUFA3P4-201ENST00000560814 250 ntBASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.31□□□□□ -1.4
USB1Q9BQ65 AC011193.2-201ENST00000582638 367 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms